Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004462	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10020931	0.97[ASN][1000 genomes]
rs10023422	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10027160	0.95[ASN][1000 genomes]
rs10027478	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10517676	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11935204	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12711313	0.89[ASN][1000 genomes]
rs13146529	1.00[CHB][hapmap]
rs13149222	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1351462	0.87[YRI][hapmap]
rs1383694	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2345277	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34174601	0.84[EUR][1000 genomes]
rs4142913	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61625157	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6839071	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7662735	0.87[ASN][1000 genomes]
rs7671381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7690058	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1025064	chr4:158719316-158898333	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158724400-158725400	Enhancers	HepG2	liver
2	chr4:158724600-158727000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:158724600-158727000	Enhancers	Fetal Intestine Large	intestine
4	chr4:158724600-158727600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:158724800-158725600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:158724800-158725600	Enhancers	Fetal Intestine Small	intestine
7	chr4:158724800-158725600	Enhancers	Fetal Lung	lung
8	chr4:158724800-158734400	Weak transcription	Aorta	Aorta

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