Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10008290	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10024795	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025870	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10049868	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11930777	0.81[EUR][1000 genomes]
rs11932544	0.90[EUR][1000 genomes]
rs1533809	0.90[EUR][1000 genomes]
rs17036808	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28408828	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28437331	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28673393	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28852765	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28869529	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903417	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57569547	0.84[EUR][1000 genomes]
rs58049329	0.90[EUR][1000 genomes]
rs59661502	0.90[EUR][1000 genomes]
rs6533258	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6833462	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835938	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73837165	0.90[EUR][1000 genomes]
rs7661375	0.90[EUR][1000 genomes]
rs7682103	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879706	chr4:107477804-107546665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107491200-107503800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107498000-107498400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr4:107498000-107498600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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