Variant report

Variant	rs11930777
Chromosome Location	chr4:107442430-107442431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10008290	0.81[EUR][1000 genomes]
rs10024795	0.81[EUR][1000 genomes]
rs10024903	0.81[EUR][1000 genomes]
rs10025870	0.91[EUR][1000 genomes]
rs10049868	0.91[EUR][1000 genomes]
rs11932544	0.91[EUR][1000 genomes]
rs1533809	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17036808	0.81[EUR][1000 genomes]
rs28408828	0.91[EUR][1000 genomes]
rs28673393	0.91[EUR][1000 genomes]
rs28852765	0.87[EUR][1000 genomes]
rs28869529	0.91[EUR][1000 genomes]
rs2903417	0.91[EUR][1000 genomes]
rs57569547	0.85[EUR][1000 genomes]
rs58049329	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59661502	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6533258	0.91[EUR][1000 genomes]
rs6833462	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6835938	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73837165	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7661375	0.91[EUR][1000 genomes]
rs7682103	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351486	chr4:107439790-107442919	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107415200-107450200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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