Variant report

Variant	rs10027185
Chromosome Location	chr4:54505664-54505665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10005578	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10006267	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10010205	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10021678	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10027544	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10031525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs10031866	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1039985	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12645402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs13146347	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13148245	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1477878	0.87[ASN][1000 genomes]
rs1477880	0.86[ASN][1000 genomes]
rs17083218	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17083272	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083277	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1991972	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1991973	0.97[ASN][1000 genomes]
rs2086048	0.90[ASN][1000 genomes]
rs2117599	0.83[CEU][hapmap]
rs2219742	0.87[ASN][1000 genomes]
rs28678201	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3942650	0.97[ASN][1000 genomes]
rs4864809	1.00[ASN][1000 genomes]
rs6554120	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6554121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816209	1.00[ASN][1000 genomes]
rs6818959	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6843799	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6849381	0.88[ASN][1000 genomes]
rs6858782	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750695	0.99[ASN][1000 genomes]
rs7688605	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54485200-54505800	Weak transcription	Esophagus	oesophagus
2	chr4:54494600-54507000	Weak transcription	Right Ventricle	heart
3	chr4:54501400-54506400	Weak transcription	Stomach Mucosa	stomach
4	chr4:54501400-54507000	Weak transcription	Left Ventricle	heart
5	chr4:54501400-54507000	Weak transcription	Lung	lung
6	chr4:54501400-54510800	Weak transcription	Right Atrium	heart
7	chr4:54501600-54507000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:54502200-54506600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:54502200-54507000	Weak transcription	Gastric	stomach
10	chr4:54502800-54506200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:54502800-54507000	Weak transcription	Pancreas	Pancrea
12	chr4:54502800-54507600	Weak transcription	Adipose Nuclei	Adipose
13	chr4:54503000-54506400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:54503000-54506400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:54505600-54507600	Enhancers	GM12878-XiMat	blood
16	chr4:54505600-54508400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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