Variant report

Variant	rs1039985
Chromosome Location	chr4:54536699-54536700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10005578	0.85[EUR][1000 genomes]
rs10006267	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10010205	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10021678	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10027185	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10027544	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10031525	0.88[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10031866	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12645402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs13146347	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13148245	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1477878	0.99[ASN][1000 genomes]
rs1477880	1.00[ASN][1000 genomes]
rs17083218	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17083272	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083277	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1965112	0.80[MEX][hapmap]
rs1991972	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1991973	0.83[ASN][1000 genomes]
rs2086048	0.94[ASN][1000 genomes]
rs2219742	0.99[ASN][1000 genomes]
rs28678201	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3942650	0.83[ASN][1000 genomes]
rs4864809	0.86[ASN][1000 genomes]
rs6554120	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554121	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816209	0.86[ASN][1000 genomes]
rs6818959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6822736	0.92[ASN][1000 genomes]
rs6843799	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6849381	0.94[ASN][1000 genomes]
rs6858782	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs750695	0.85[ASN][1000 genomes]
rs7688605	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54536600-54536800	Enhancers	Pancreatic Islets	Pancreatic Islet

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