Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10006267	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10010205	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10021678	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10027185	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10027544	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10031866	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1039985	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12645402	0.80[ASN][1000 genomes]
rs13146347	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13148245	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1477878	0.85[ASN][1000 genomes]
rs1477880	0.85[ASN][1000 genomes]
rs17083218	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17083272	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17083277	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1991972	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2086048	0.82[ASN][1000 genomes]
rs2219742	0.85[ASN][1000 genomes]
rs6554120	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6554121	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6843799	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6849381	0.80[ASN][1000 genomes]
rs6858782	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7688605	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54543200-54550400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:54547600-54549600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54547600-54549600	Enhancers	NHLF	lung
4	chr4:54547600-54553000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:54547800-54549200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:54547800-54549400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:54547800-54550800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:54547800-54556000	Enhancers	NHDF-Ad	bronchial
9	chr4:54548000-54549200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:54548000-54549400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:54548000-54549400	Enhancers	Osteobl	bone
12	chr4:54548200-54548800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:54548200-54549200	Enhancers	NH-A	brain
14	chr4:54548600-54549200	Weak transcription	Fetal Stomach	stomach

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