Variant report

Variant	rs6843799
Chromosome Location	chr4:54523779-54523780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10005578	0.83[ASN][1000 genomes]
rs10006267	0.83[ASN][1000 genomes]
rs10010205	0.83[ASN][1000 genomes]
rs10021678	0.81[ASN][1000 genomes]
rs10027185	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10027544	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10031525	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10031866	0.82[ASN][1000 genomes]
rs1039985	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12645402	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146347	0.88[ASN][1000 genomes]
rs13148245	0.83[ASN][1000 genomes]
rs1477878	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1477880	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083218	0.83[ASN][1000 genomes]
rs17083272	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17083277	0.92[ASN][1000 genomes]
rs1991972	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1991973	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2086048	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2219742	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28678201	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3942650	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4864809	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554120	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6554121	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6816209	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818959	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6822736	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6849381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858782	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs750695	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7688605	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54520200-54524400	Weak transcription	Ovary	ovary
2	chr4:54520800-54524000	Weak transcription	Fetal Heart	heart
3	chr4:54521000-54524200	Weak transcription	Fetal Stomach	stomach
4	chr4:54522000-54524600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:54522200-54526000	Weak transcription	Gastric	stomach
6	chr4:54522200-54526000	Weak transcription	Right Atrium	heart
7	chr4:54522400-54525400	Weak transcription	Stomach Mucosa	stomach
8	chr4:54523400-54523800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:54523400-54523800	Enhancers	NHDF-Ad	bronchial
10	chr4:54523400-54524600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:54523400-54525400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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