Variant report

Variant	rs10029500
Chromosome Location	chr4:57970987-57970988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:57970748-57971516	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr4:57970133-57972041	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
IGFBP7-AS1	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10029224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11133485	0.97[AFR][1000 genomes]
rs4242006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4262036	1.00[AMR][1000 genomes]
rs4317262	1.00[AMR][1000 genomes]
rs4326070	1.00[AMR][1000 genomes]
rs4346709	1.00[AMR][1000 genomes]
rs4504318	1.00[AMR][1000 genomes]
rs4515224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4579185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4590105	1.00[AMR][1000 genomes]
rs4600977	1.00[AMR][1000 genomes]
rs4865184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4865185	1.00[AMR][1000 genomes]
rs4865186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4865190	1.00[AMR][1000 genomes]
rs6554415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6810409	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839914	1.00[AMR][1000 genomes]
rs6850578	1.00[AMR][1000 genomes]
rs7666436	1.00[AMR][1000 genomes]
rs9992230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57956800-57974400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:57957000-57974600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:57957200-57975200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:57958200-57975200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:57958200-57975400	Weak transcription	Small Intestine	intestine
6	chr4:57959800-57973400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:57964000-57973200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:57964200-57972200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:57964600-57973200	Weak transcription	Pancreas	Pancrea
10	chr4:57965600-57972600	Weak transcription	Thymus	Thymus
11	chr4:57966200-57975200	Weak transcription	Lung	lung
12	chr4:57967800-57972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:57967800-57973200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:57968000-57973000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:57969000-57972000	Genic enhancers	HUVEC	blood vessel
16	chr4:57969200-57971400	Weak transcription	Brain Angular Gyrus	brain
17	chr4:57969400-57971200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:57969400-57971800	Enhancers	A549	lung
19	chr4:57969600-57971000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:57969600-57971000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:57969600-57971000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:57969600-57971000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:57969600-57971000	Weak transcription	Brain Substantia Nigra	brain
24	chr4:57969600-57971000	Weak transcription	Left Ventricle	heart
25	chr4:57969600-57971000	Enhancers	Osteobl	bone
26	chr4:57969600-57971200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:57969600-57971200	Weak transcription	Right Ventricle	heart
28	chr4:57969600-57971200	Weak transcription	HSMM	muscle
29	chr4:57969600-57971200	Enhancers	NH-A	brain
30	chr4:57969600-57971400	Enhancers	Adipose Nuclei	Adipose
31	chr4:57969600-57971400	Weak transcription	HMEC	breast
32	chr4:57969600-57972000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:57969600-57972000	Enhancers	Rectal Smooth Muscle	rectum
34	chr4:57969600-57972400	Weak transcription	Fetal Thymus	thymus
35	chr4:57969600-57972400	Weak transcription	Ovary	ovary
36	chr4:57969600-57972400	Weak transcription	Spleen	Spleen
37	chr4:57969600-57973200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:57969600-57973200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:57969600-57973200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:57969600-57974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:57969600-57975000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:57969600-57975400	Weak transcription	Colonic Mucosa	Colon
43	chr4:57969800-57971200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:57969800-57971200	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:57969800-57971200	Weak transcription	NHLF	lung
46	chr4:57969800-57971400	Weak transcription	Fetal Kidney	kidney
47	chr4:57969800-57971400	Enhancers	Stomach Smooth Muscle	stomach
48	chr4:57969800-57972600	Weak transcription	Fetal Heart	heart
49	chr4:57969800-57975400	Weak transcription	Fetal Lung	lung
50	chr4:57970000-57971000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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