Variant report

Variant	rs4579185
Chromosome Location	chr4:57978724-57978725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:57978362-57978968	HL-60	blood:	n/a	n/a
2	MYC	chr4:57978546-57979009	NB4	blood:	n/a	chr4:57978764-57978774 chr4:57978984-57978995
3	SPI1	chr4:57978511-57979207	HL-60	blood:	n/a	n/a
4	GATA3	chr4:57978350-57978780	MCF-7	breast:	n/a	n/a
5	MAX	chr4:57978515-57978992	NB4	blood:	n/a	chr4:57978764-57978774
6	MYC	chr4:57978552-57978736	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
IGFBP7	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10029224	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11133485	0.86[AFR][1000 genomes]
rs4242006	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4262036	1.00[AMR][1000 genomes]
rs4317262	1.00[AMR][1000 genomes]
rs4326070	1.00[AMR][1000 genomes]
rs4346709	1.00[AMR][1000 genomes]
rs4504318	1.00[AMR][1000 genomes]
rs4515224	1.00[AMR][1000 genomes]
rs4590105	1.00[AMR][1000 genomes]
rs4600977	1.00[AMR][1000 genomes]
rs4865184	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4865185	1.00[AMR][1000 genomes]
rs4865186	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4865190	1.00[AMR][1000 genomes]
rs6554415	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554416	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6810409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832133	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839914	1.00[AMR][1000 genomes]
rs6850578	1.00[AMR][1000 genomes]
rs7666436	1.00[AMR][1000 genomes]
rs9992230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57976600-57979000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:57976600-57979200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:57977200-57979000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:57977400-57978800	Enhancers	HMEC	breast
5	chr4:57977400-57979400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:57977400-57980400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:57977600-57978800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:57977600-57979000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:57977600-57979200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:57977600-57979200	Enhancers	Fetal Muscle Leg	muscle
11	chr4:57977600-57980400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:57977600-57980800	Weak transcription	Hela-S3	cervix
13	chr4:57977600-57981000	Weak transcription	Spleen	Spleen
14	chr4:57977600-57985000	Weak transcription	Brain Angular Gyrus	brain
15	chr4:57977600-57985000	Weak transcription	A549	lung
16	chr4:57977600-57985200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:57977800-57978800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:57977800-57978800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:57977800-57978800	Enhancers	Fetal Heart	heart
20	chr4:57977800-57978800	Enhancers	Rectal Smooth Muscle	rectum
21	chr4:57977800-57978800	Enhancers	Stomach Smooth Muscle	stomach
22	chr4:57977800-57979000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:57977800-57979000	Enhancers	HUVEC	blood vessel
24	chr4:57977800-57979200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:57977800-57979200	Enhancers	Primary B cells from cord blood	blood
26	chr4:57977800-57979200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:57977800-57979200	Enhancers	Fetal Kidney	kidney
28	chr4:57977800-57979200	Enhancers	Fetal Lung	lung
29	chr4:57977800-57979200	Enhancers	NH-A	brain
30	chr4:57977800-57979200	Enhancers	NHEK	skin
31	chr4:57977800-57979400	Enhancers	Fetal Stomach	stomach
32	chr4:57977800-57979600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr4:57977800-57979800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:57977800-57981000	Weak transcription	HSMM	muscle
35	chr4:57977800-57981000	Weak transcription	NHDF-Ad	bronchial
36	chr4:57977800-57983200	Weak transcription	Adipose Nuclei	Adipose
37	chr4:57977800-57984200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr4:57977800-57984200	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:57977800-57985000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:57978000-57978800	Bivalent Enhancer	Fetal Thymus	thymus
41	chr4:57978000-57979000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:57978000-57979000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:57978000-57979200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr4:57978000-57981000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:57978000-57981000	Weak transcription	HSMMtube	muscle
46	chr4:57978000-57981600	Enhancers	Primary hematopoietic stem cells	blood
47	chr4:57978000-57984200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:57978000-57984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:57978200-57978800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
50	chr4:57978200-57979200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links