Variant report

Variant	rs4346709
Chromosome Location	chr4:58006073-58006074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10029224	1.00[AMR][1000 genomes]
rs10029500	1.00[AMR][1000 genomes]
rs4242006	1.00[AMR][1000 genomes]
rs4262036	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4317262	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4326070	1.00[AMR][1000 genomes]
rs4504318	1.00[AMR][1000 genomes]
rs4515224	1.00[AMR][1000 genomes]
rs4558925	0.88[AFR][1000 genomes]
rs4579185	1.00[AMR][1000 genomes]
rs4590105	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4600977	1.00[AMR][1000 genomes]
rs4865184	1.00[AMR][1000 genomes]
rs4865185	1.00[AMR][1000 genomes]
rs4865186	1.00[AMR][1000 genomes]
rs4865190	1.00[AMR][1000 genomes]
rs6554415	1.00[AMR][1000 genomes]
rs6554416	1.00[AMR][1000 genomes]
rs6554417	1.00[AMR][1000 genomes]
rs6810409	1.00[AMR][1000 genomes]
rs6832133	1.00[AMR][1000 genomes]
rs6839914	1.00[AMR][1000 genomes]
rs6850578	1.00[AMR][1000 genomes]
rs7666436	1.00[AMR][1000 genomes]
rs9992230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1010053	chr4:57978944-58331324	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv594207	chr4:57987433-58098554	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:58003800-58010000	Weak transcription	Osteobl	bone
2	chr4:58005800-58006200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:58005800-58007000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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