The 2.0 version of rSNPBase

Variant report

Variant rs6554416
Chromosome Location chr4:57971202-57971203
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:57956800-57974400 Weak transcription Monocytes-CD14+_RO01746 blood
2 chr4:57957000-57974600 Weak transcription Primary hematopoietic stem cells blood
3 chr4:57957200-57975200 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr4:57958200-57975200 Weak transcription Primary monocytes fromperipheralblood blood
5 chr4:57958200-57975400 Weak transcription Small Intestine intestine
6 chr4:57959800-57973400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
7 chr4:57964000-57973200 Weak transcription Duodenum Mucosa Duodenum
8 chr4:57964200-57972200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr4:57964600-57973200 Weak transcription Pancreas Pancrea
10 chr4:57965600-57972600 Weak transcription Thymus Thymus
11 chr4:57966200-57975200 Weak transcription Lung lung
12 chr4:57967800-57972600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr4:57967800-57973200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr4:57968000-57973000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr4:57969000-57972000 Genic enhancers HUVEC blood vessel
16 chr4:57969200-57971400 Weak transcription Brain Angular Gyrus brain
17 chr4:57969400-57971800 Enhancers A549 lung
18 chr4:57969600-57971400 Enhancers Adipose Nuclei Adipose
19 chr4:57969600-57971400 Weak transcription HMEC breast
20 chr4:57969600-57972000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
21 chr4:57969600-57972000 Enhancers Rectal Smooth Muscle rectum
22 chr4:57969600-57972400 Weak transcription Fetal Thymus thymus
23 chr4:57969600-57972400 Weak transcription Ovary ovary
24 chr4:57969600-57972400 Weak transcription Spleen Spleen
25 chr4:57969600-57973200 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr4:57969600-57973200 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr4:57969600-57973200 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr4:57969600-57974800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr4:57969600-57975000 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr4:57969600-57975400 Weak transcription Colonic Mucosa Colon
31 chr4:57969800-57971400 Weak transcription Fetal Kidney kidney
32 chr4:57969800-57971400 Enhancers Stomach Smooth Muscle stomach
33 chr4:57969800-57972600 Weak transcription Fetal Heart heart
34 chr4:57969800-57975400 Weak transcription Fetal Lung lung
35 chr4:57970200-57971800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr4:57970200-57974400 Weak transcription Fetal Stomach stomach
37 chr4:57970400-57971400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr4:57970400-57971400 Enhancers Right Atrium heart
39 chr4:57970400-57971600 Enhancers Skeletal Muscle Female skeletal muscle
40 chr4:57970400-57971800 Enhancers Brain Hippocampus Middle brain
41 chr4:57970400-57972000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr4:57970400-57975600 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr4:57970600-57973200 Weak transcription Fetal Muscle Leg muscle
44 chr4:57970800-57971600 Enhancers ES-WA7 Cell Line embryonic stem cell
45 chr4:57970800-57972000 Enhancers Brain Anterior Caudate brain
46 chr4:57970800-57972000 Enhancers Skeletal Muscle Male skeletal muscle
47 chr4:57970800-57972600 Genic enhancers HSMMtube muscle
48 chr4:57970800-57973200 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr4:57970800-57973600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr4:57971000-57971400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015