Variant report

Variant	rs10030608
Chromosome Location	chr4:153038614-153038615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10033770	1.00[AMR][1000 genomes]
rs17028774	1.00[AMR][1000 genomes]
rs17028780	1.00[AMR][1000 genomes]
rs17028782	1.00[AMR][1000 genomes]
rs17028785	1.00[AMR][1000 genomes]
rs28391448	1.00[AMR][1000 genomes]
rs28704615	1.00[AMR][1000 genomes]
rs56951677	1.00[AMR][1000 genomes]
rs57378045	1.00[AMR][1000 genomes]
rs58298033	1.00[AMR][1000 genomes]
rs58467748	1.00[AMR][1000 genomes]
rs58995086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:153031600-153040000	Weak transcription	Right Ventricle	heart
3	chr4:153033200-153040800	Enhancers	Fetal Thymus	thymus
4	chr4:153034200-153040000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:153035000-153040200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:153035400-153038800	Weak transcription	Psoas Muscle	Psoas
7	chr4:153035400-153040600	Enhancers	Thymus	Thymus
8	chr4:153035800-153038800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:153035800-153038800	Weak transcription	Fetal Brain Male	brain
10	chr4:153035800-153039400	Enhancers	Left Ventricle	heart
11	chr4:153036200-153040600	Enhancers	Fetal Muscle Leg	muscle
12	chr4:153036600-153040600	Enhancers	Dnd41	blood
13	chr4:153037400-153038800	Weak transcription	Fetal Stomach	stomach
14	chr4:153037400-153039200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:153037400-153039400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:153037600-153038800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:153037600-153038800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:153037600-153039000	Enhancers	Primary T cells from cord blood	blood
19	chr4:153037600-153039000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:153037600-153040000	Weak transcription	Lung	lung
21	chr4:153037600-153040200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:153037600-153040600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr4:153037800-153039600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr4:153038200-153039200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:153038400-153039800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:153038600-153039200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:153038600-153039600	Enhancers	Fetal Heart	heart

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