Variant report

Variant	rs58467748
Chromosome Location	chr4:153179093-153179094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10030608	1.00[AMR][1000 genomes]
rs17028774	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028780	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028782	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028792	0.89[AFR][1000 genomes]
rs17028905	1.00[AMR][1000 genomes]
rs4443256	1.00[AMR][1000 genomes]
rs56951677	1.00[AMR][1000 genomes]
rs57378045	1.00[AMR][1000 genomes]
rs58298033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58995086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153175400-153180400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:153175400-153180400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr4:153175400-153180400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:153175400-153180400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:153175600-153180400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:153175600-153180800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr4:153175800-153180400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:153175800-153180800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:153176000-153181200	Enhancers	HUVEC	blood vessel
10	chr4:153176400-153179600	Enhancers	NHEK	skin
11	chr4:153176400-153180200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:153176400-153180400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:153176400-153181000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:153176600-153179400	Enhancers	Lung	lung
15	chr4:153176600-153179600	Enhancers	Spleen	Spleen
16	chr4:153176600-153180400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:153176600-153180400	Enhancers	Thymus	Thymus
18	chr4:153176600-153180400	Enhancers	GM12878-XiMat	blood
19	chr4:153176600-153180400	Enhancers	HSMMtube	muscle
20	chr4:153176600-153180800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:153176600-153180800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr4:153176600-153180800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr4:153176600-153181400	Enhancers	Fetal Thymus	thymus
24	chr4:153177000-153180600	Enhancers	Primary T cells from cord blood	blood
25	chr4:153177000-153180600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr4:153177000-153181200	Weak transcription	NHLF	lung
27	chr4:153177400-153180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:153177600-153179400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:153177600-153179400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr4:153177600-153180000	Enhancers	Dnd41	blood
31	chr4:153177600-153180200	Weak transcription	Stomach Mucosa	stomach
32	chr4:153178000-153179200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr4:153178000-153180400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:153178400-153179400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:153178400-153179400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr4:153178400-153179400	Enhancers	Right Atrium	heart
37	chr4:153178400-153179600	Enhancers	HSMM	muscle
38	chr4:153178400-153180200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr4:153178400-153180600	Enhancers	HMEC	breast
40	chr4:153178400-153181000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:153178400-153181400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:153178600-153179200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr4:153178600-153179200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:153178600-153179200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr4:153178600-153179200	Enhancers	Fetal Heart	heart
46	chr4:153178600-153179400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:153178600-153179400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:153178600-153179400	Enhancers	H9 Cell Line	embryonic stem cell
49	chr4:153178600-153179400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr4:153178600-153179400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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