Variant report

Variant	rs56951677
Chromosome Location	chr4:153209293-153209294
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10030608	1.00[AMR][1000 genomes]
rs17028774	1.00[AMR][1000 genomes]
rs17028780	1.00[AMR][1000 genomes]
rs17028782	1.00[AMR][1000 genomes]
rs17028785	1.00[AMR][1000 genomes]
rs17028905	1.00[AMR][1000 genomes]
rs4443256	1.00[AMR][1000 genomes]
rs55941341	0.89[AFR][1000 genomes]
rs57378045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58298033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58467748	1.00[AMR][1000 genomes]
rs58995086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153200600-153213600	Weak transcription	Pancreas	Pancrea
2	chr4:153201000-153214600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:153201000-153214600	Weak transcription	Esophagus	oesophagus
4	chr4:153201400-153211000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:153203000-153214600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:153205800-153211000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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