Variant report

Variant	rs17028780
Chromosome Location	chr4:153189287-153189288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10030608	1.00[AMR][1000 genomes]
rs17028774	0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028785	0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028792	0.89[AFR][1000 genomes]
rs17028905	1.00[AMR][1000 genomes]
rs4443256	1.00[AMR][1000 genomes]
rs56951677	1.00[AMR][1000 genomes]
rs57378045	1.00[AMR][1000 genomes]
rs58298033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58467748	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58995086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153187800-153189400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:153187800-153190000	Enhancers	NHEK	skin
3	chr4:153188200-153189400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:153188200-153199400	Weak transcription	Right Atrium	heart
5	chr4:153188600-153189400	Enhancers	Fetal Thymus	thymus
6	chr4:153188600-153189400	Enhancers	GM12878-XiMat	blood
7	chr4:153189000-153189400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:153189000-153194400	Weak transcription	HMEC	breast
9	chr4:153189200-153193600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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