Variant report

Variant	rs10035665
Chromosome Location	chr5:151101708-151101709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151101303..151102858-chr5:151113362..151114947,2	K562	blood:
2	chr5:151098861..151101933-chr5:151136563..151139465,3	K562	blood:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1036198	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10476774	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11950215	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11958295	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13361312	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1432858	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432859	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2010852	0.81[ASN][1000 genomes]
rs2011050	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55779149	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55866663	0.83[EUR][1000 genomes]
rs56413631	0.83[EUR][1000 genomes]
rs59045437	0.83[EUR][1000 genomes]
rs60901182	0.86[EUR][1000 genomes]
rs61468668	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6579893	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6579894	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67697712	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72800261	0.93[EUR][1000 genomes]
rs7700495	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs982688	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs982689	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151098000-151109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:151098000-151120200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
4	chr5:151098200-151101800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:151098200-151102000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:151098400-151104200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:151098800-151102000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:151098800-151112000	Weak transcription	Psoas Muscle	Psoas
9	chr5:151098800-151117800	Weak transcription	HSMM	muscle
10	chr5:151099200-151102800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:151099200-151103000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:151099400-151102200	Enhancers	Primary B cells from cord blood	blood
13	chr5:151099400-151102200	Flanking Active TSS	GM12878-XiMat	blood
14	chr5:151099400-151103000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:151099400-151106200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:151099600-151102800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:151099600-151103000	Enhancers	Primary B cells from peripheral blood	blood
18	chr5:151099600-151104000	Weak transcription	Ovary	ovary
19	chr5:151099800-151101800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:151099800-151102000	Enhancers	HSMMtube	muscle
21	chr5:151100000-151116000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:151100200-151112000	Weak transcription	Primary T cells from cord blood	blood
23	chr5:151100400-151101800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr5:151100400-151101800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:151100400-151101800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:151100600-151101800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr5:151100600-151101800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr5:151100600-151101800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr5:151100600-151101800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:151100600-151102000	Enhancers	Primary hematopoietic stem cells	blood
31	chr5:151100600-151102000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:151100600-151102000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:151100600-151102200	Enhancers	HMEC	breast
34	chr5:151100800-151101800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr5:151100800-151101800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr5:151100800-151101800	Enhancers	Fetal Stomach	stomach
37	chr5:151100800-151102000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr5:151100800-151102200	Enhancers	NHEK	skin
39	chr5:151100800-151102800	Enhancers	Adipose Nuclei	Adipose
40	chr5:151101000-151101800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr5:151101000-151101800	Enhancers	Right Atrium	heart
42	chr5:151101000-151102200	Enhancers	Fetal Intestine Small	intestine
43	chr5:151101000-151102400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:151101000-151102800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:151101200-151106000	Weak transcription	Fetal Muscle Leg	muscle
46	chr5:151101600-151105600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links