Variant report

Variant	rs10476774
Chromosome Location	chr5:151098719-151098720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151038210..151039069-chr5:151098478..151099975,6	MCF-7	breast:
2	chr5:151038068..151039088-chr5:151098415..151099196,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035665	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1036198	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950215	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11958295	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13361312	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432858	0.98[EUR][1000 genomes]
rs1432859	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2010852	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2011050	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2060210	0.80[EUR][1000 genomes]
rs55779149	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55866663	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56413631	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59045437	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60901182	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61468668	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6579893	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6579894	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67697712	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72800261	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7700495	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs982688	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs982689	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151096800-151099000	Enhancers	NHDF-Ad	bronchial
2	chr5:151097000-151098800	Enhancers	Right Atrium	heart
3	chr5:151097000-151099000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:151097000-151099000	Enhancers	Fetal Stomach	stomach
5	chr5:151097000-151099400	Enhancers	GM12878-XiMat	blood
6	chr5:151097000-151099800	Enhancers	Fetal Muscle Leg	muscle
7	chr5:151097000-151100000	Enhancers	NHLF	lung
8	chr5:151097200-151098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:151097200-151098800	Enhancers	Psoas Muscle	Psoas
10	chr5:151097200-151098800	Enhancers	HSMM	muscle
11	chr5:151097200-151099000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:151097200-151099000	Enhancers	NH-A	brain
13	chr5:151097200-151099400	Enhancers	Rectal Smooth Muscle	rectum
14	chr5:151097200-151099600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:151097400-151099000	Enhancers	Colon Smooth Muscle	Colon
16	chr5:151097600-151098800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:151097600-151098800	Flanking Active TSS	Osteobl	bone
18	chr5:151097800-151101000	Weak transcription	Spleen	Spleen
19	chr5:151098000-151109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr5:151098000-151120200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
22	chr5:151098200-151098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:151098200-151101000	Weak transcription	A549	lung
24	chr5:151098200-151101800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:151098200-151102000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:151098400-151098800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:151098400-151098800	Enhancers	Placenta	Placenta
28	chr5:151098400-151099000	Enhancers	HSMMtube	muscle
29	chr5:151098400-151099800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:151098400-151100400	Enhancers	Adipose Nuclei	Adipose
31	chr5:151098400-151100600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:151098400-151100800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr5:151098400-151101600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:151098400-151104200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:151098600-151098800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:151098600-151098800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:151098600-151099000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:151098600-151099000	Enhancers	Fetal Muscle Trunk	muscle
39	chr5:151098600-151099600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:151098600-151099600	Enhancers	Ovary	ovary
41	chr5:151098600-151100600	Weak transcription	HMEC	breast

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