Variant report

Variant	rs2011050
Chromosome Location	chr5:151097281-151097282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035665	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1036198	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476774	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950215	0.88[ASW][hapmap];0.81[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11958295	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13361312	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432858	0.86[EUR][1000 genomes]
rs1432859	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010852	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060210	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55779149	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55866663	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56413631	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59045437	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60901182	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61468668	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579893	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579894	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67697712	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72800261	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7700495	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs982688	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982689	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151096800-151097400	Enhancers	Placenta	Placenta
2	chr5:151096800-151097600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:151096800-151097800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:151096800-151099000	Enhancers	NHDF-Ad	bronchial
5	chr5:151097000-151097400	Enhancers	HSMMtube	muscle
6	chr5:151097000-151097600	Enhancers	Osteobl	bone
7	chr5:151097000-151097800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:151097000-151097800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:151097000-151097800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr5:151097000-151097800	Enhancers	Spleen	Spleen
11	chr5:151097000-151098000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:151097000-151098000	Enhancers	Brain Substantia Nigra	brain
13	chr5:151097000-151098200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:151097000-151098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:151097000-151098400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:151097000-151098800	Enhancers	Right Atrium	heart
17	chr5:151097000-151099000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:151097000-151099000	Enhancers	Fetal Stomach	stomach
19	chr5:151097000-151099400	Enhancers	GM12878-XiMat	blood
20	chr5:151097000-151099800	Enhancers	Fetal Muscle Leg	muscle
21	chr5:151097000-151100000	Enhancers	NHLF	lung
22	chr5:151097200-151097400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:151097200-151097600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr5:151097200-151097800	Enhancers	Brain Anterior Caudate	brain
25	chr5:151097200-151098000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:151097200-151098200	Enhancers	Brain Cingulate Gyrus	brain
27	chr5:151097200-151098200	Enhancers	Brain Hippocampus Middle	brain
28	chr5:151097200-151098200	Enhancers	A549	lung
29	chr5:151097200-151098400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:151097200-151098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:151097200-151098400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr5:151097200-151098400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr5:151097200-151098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr5:151097200-151098800	Enhancers	Psoas Muscle	Psoas
35	chr5:151097200-151098800	Enhancers	HSMM	muscle
36	chr5:151097200-151099000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr5:151097200-151099000	Enhancers	NH-A	brain
38	chr5:151097200-151099400	Enhancers	Rectal Smooth Muscle	rectum
39	chr5:151097200-151099600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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