Variant report

Variant	rs982689
Chromosome Location	chr5:151097128-151097129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035665	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1036198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476774	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950215	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11958295	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13361312	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432858	0.86[EUR][1000 genomes]
rs1432859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010852	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011050	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060210	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55779149	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55866663	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56413631	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59045437	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60901182	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61468668	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579893	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579894	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67697712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72800261	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7700495	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs982688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151088000-151097200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151096800-151097200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:151096800-151097200	Enhancers	Adipose Nuclei	Adipose
4	chr5:151096800-151097400	Enhancers	Placenta	Placenta
5	chr5:151096800-151097600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:151096800-151097800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:151096800-151099000	Enhancers	NHDF-Ad	bronchial
8	chr5:151097000-151097400	Enhancers	HSMMtube	muscle
9	chr5:151097000-151097600	Enhancers	Osteobl	bone
10	chr5:151097000-151097800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:151097000-151097800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:151097000-151097800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:151097000-151097800	Enhancers	Spleen	Spleen
14	chr5:151097000-151098000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:151097000-151098000	Enhancers	Brain Substantia Nigra	brain
16	chr5:151097000-151098200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:151097000-151098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:151097000-151098400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:151097000-151098800	Enhancers	Right Atrium	heart
20	chr5:151097000-151099000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:151097000-151099000	Enhancers	Fetal Stomach	stomach
22	chr5:151097000-151099400	Enhancers	GM12878-XiMat	blood
23	chr5:151097000-151099800	Enhancers	Fetal Muscle Leg	muscle
24	chr5:151097000-151100000	Enhancers	NHLF	lung

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