Variant report

Variant	rs10036657
Chromosome Location	chr5:115173959-115173960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr5:115173887-115173975	K562	blood:	n/a	n/a

Variant related genes	Relation type
ATG12	TF binding region
AP3S1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10052079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10054972	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10058994	1.00[EUR][1000 genomes]
rs10059199	1.00[EUR][1000 genomes]
rs10067222	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10070325	1.00[EUR][1000 genomes]
rs10074061	1.00[EUR][1000 genomes]
rs10074066	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10075816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10478262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519428	1.00[EUR][1000 genomes]
rs10519429	1.00[EUR][1000 genomes]
rs11959669	1.00[EUR][1000 genomes]
rs17138236	1.00[EUR][1000 genomes]
rs1968365	1.00[EUR][1000 genomes]
rs28420368	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4920893	1.00[EUR][1000 genomes]
rs4921029	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4921030	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6861998	1.00[EUR][1000 genomes]
rs6872587	1.00[EUR][1000 genomes]
rs6875708	1.00[EUR][1000 genomes]
rs73257802	1.00[EUR][1000 genomes]
rs73265480	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73265491	1.00[EUR][1000 genomes]
rs73780683	1.00[EUR][1000 genomes]
rs9326975	1.00[EUR][1000 genomes]
rs9654524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115155000-115174400	Weak transcription	Fetal Heart	heart
2	chr5:115161800-115176200	Weak transcription	Gastric	stomach
3	chr5:115162000-115174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:115162000-115176200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:115162000-115176600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:115162600-115175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:115163000-115176400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:115163200-115174000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:115163400-115174200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:115163800-115174000	Strong transcription	Fetal Thymus	thymus
11	chr5:115163800-115174400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:115163800-115174600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:115164000-115174000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:115164000-115174000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr5:115164000-115174200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:115164200-115174400	Weak transcription	Pancreas	Pancrea
17	chr5:115164600-115174000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:115166000-115174200	Strong transcription	Primary B cells from cord blood	blood
19	chr5:115166600-115175200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:115166600-115175600	Weak transcription	Small Intestine	intestine
21	chr5:115166800-115175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:115168400-115174400	Weak transcription	Spleen	Spleen
23	chr5:115168400-115176400	Weak transcription	Aorta	Aorta
24	chr5:115168800-115174000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:115169000-115174000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:115169000-115174000	Strong transcription	A549	lung
27	chr5:115169000-115174200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:115169000-115174200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:115169200-115174600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:115169400-115174000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:115169600-115174000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:115169600-115174400	Strong transcription	K562	blood
33	chr5:115170000-115174400	Weak transcription	Brain Angular Gyrus	brain
34	chr5:115170400-115175600	Weak transcription	Right Ventricle	heart
35	chr5:115170600-115174400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:115170600-115174400	Weak transcription	Brain Germinal Matrix	brain
37	chr5:115171600-115174400	Weak transcription	Esophagus	oesophagus
38	chr5:115171600-115174400	Weak transcription	Lung	lung
39	chr5:115171600-115174400	Weak transcription	NHEK	skin
40	chr5:115171800-115174200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr5:115172200-115174400	Weak transcription	Colonic Mucosa	Colon
42	chr5:115172200-115174600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:115172600-115174600	Weak transcription	Brain Anterior Caudate	brain
44	chr5:115172600-115174600	Weak transcription	Thymus	Thymus
45	chr5:115172800-115174000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:115172800-115174000	Weak transcription	Fetal Brain Male	brain
47	chr5:115172800-115174200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:115172800-115174800	Strong transcription	Fetal Stomach	stomach
49	chr5:115173000-115174000	Weak transcription	Brain Hippocampus Middle	brain
50	chr5:115173000-115174200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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