Variant report

Variant	rs10075816
Chromosome Location	chr5:115169604-115169605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115169542-115169673	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:115169333-115170788	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115169299..115172365-chr5:115175271..115177908,3	MCF-7	breast:

Variant related genes	Relation type
ATG12	TF binding region
ENSG00000177879	Chromatin interaction
ENSG00000145782	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10036657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10052079	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10054972	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10058994	1.00[EUR][1000 genomes]
rs10059199	1.00[EUR][1000 genomes]
rs10067222	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10070325	1.00[EUR][1000 genomes]
rs10074061	1.00[EUR][1000 genomes]
rs10074066	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10478262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519428	1.00[EUR][1000 genomes]
rs10519429	1.00[EUR][1000 genomes]
rs11959669	1.00[EUR][1000 genomes]
rs17138236	1.00[EUR][1000 genomes]
rs1968365	1.00[EUR][1000 genomes]
rs28420368	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4920893	1.00[EUR][1000 genomes]
rs4921029	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4921030	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6861998	1.00[EUR][1000 genomes]
rs6872587	1.00[EUR][1000 genomes]
rs6875708	1.00[EUR][1000 genomes]
rs73257802	1.00[EUR][1000 genomes]
rs73265480	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73265491	1.00[EUR][1000 genomes]
rs73780683	1.00[EUR][1000 genomes]
rs9326975	1.00[EUR][1000 genomes]
rs9654524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115152800-115171200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:115153600-115172400	Weak transcription	Fetal Brain Male	brain
3	chr5:115154600-115173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:115155000-115169800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:115155000-115174400	Weak transcription	Fetal Heart	heart
6	chr5:115157600-115171000	Weak transcription	Thymus	Thymus
7	chr5:115160600-115169800	Weak transcription	Left Ventricle	heart
8	chr5:115161800-115176200	Weak transcription	Gastric	stomach
9	chr5:115162000-115174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:115162000-115176200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:115162000-115176600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:115162400-115171800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:115162600-115175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:115162800-115170400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:115163000-115171000	Weak transcription	Hela-S3	cervix
16	chr5:115163000-115173400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:115163000-115176400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:115163200-115171000	Weak transcription	HSMMtube	muscle
19	chr5:115163200-115174000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:115163400-115173800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:115163400-115173800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr5:115163400-115173800	Strong transcription	NHDF-Ad	bronchial
23	chr5:115163400-115174200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:115163600-115171200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr5:115163600-115173200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:115163800-115172200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:115163800-115173000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:115163800-115173400	Strong transcription	HSMM	muscle
29	chr5:115163800-115174000	Strong transcription	Fetal Thymus	thymus
30	chr5:115163800-115174400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:115163800-115174600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:115164000-115172800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:115164000-115173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:115164000-115173600	Strong transcription	Osteobl	bone
35	chr5:115164000-115173800	Strong transcription	Dnd41	blood
36	chr5:115164000-115174000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr5:115164000-115174000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr5:115164000-115174200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:115164200-115173400	Strong transcription	HUVEC	blood vessel
40	chr5:115164200-115174400	Weak transcription	Pancreas	Pancrea
41	chr5:115164400-115173400	Strong transcription	Adipose Nuclei	Adipose
42	chr5:115164600-115173800	Strong transcription	Placenta	Placenta
43	chr5:115164600-115174000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:115165000-115171200	Weak transcription	Esophagus	oesophagus
45	chr5:115166000-115174200	Strong transcription	Primary B cells from cord blood	blood
46	chr5:115166600-115169800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:115166600-115169800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr5:115166600-115170600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr5:115166600-115172800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:115166600-115172800	Weak transcription	Fetal Stomach	stomach

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