Variant report
| Variant | rs6861998 |
|---|---|
| Chromosome Location | chr5:115120087-115120088 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:115089796..115091437-chr5:115120054..115122203,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CDO1-2 | chr5:115118858-115120121 | l_2998_chr5:115102646-115120121_liver |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248709 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10036657 | 1.00[EUR][1000 genomes] |
| rs10052079 | 1.00[EUR][1000 genomes] |
| rs10054972 | 1.00[EUR][1000 genomes] |
| rs10058994 | 1.00[EUR][1000 genomes] |
| rs10059199 | 1.00[EUR][1000 genomes] |
| rs10067222 | 1.00[EUR][1000 genomes] |
| rs10070325 | 1.00[EUR][1000 genomes] |
| rs10074061 | 1.00[EUR][1000 genomes] |
| rs10074066 | 1.00[EUR][1000 genomes] |
| rs10075816 | 1.00[EUR][1000 genomes] |
| rs10478262 | 1.00[EUR][1000 genomes] |
| rs10519428 | 1.00[EUR][1000 genomes] |
| rs10519429 | 1.00[EUR][1000 genomes] |
| rs11959669 | 1.00[EUR][1000 genomes] |
| rs17138236 | 1.00[EUR][1000 genomes] |
| rs1968365 | 1.00[EUR][1000 genomes] |
| rs28420368 | 1.00[EUR][1000 genomes] |
| rs4920893 | 1.00[EUR][1000 genomes] |
| rs4921029 | 1.00[EUR][1000 genomes] |
| rs4921030 | 1.00[EUR][1000 genomes] |
| rs6872587 | 1.00[EUR][1000 genomes] |
| rs6875708 | 1.00[EUR][1000 genomes] |
| rs73257802 | 1.00[EUR][1000 genomes] |
| rs73265480 | 1.00[EUR][1000 genomes] |
| rs73265491 | 1.00[EUR][1000 genomes] |
| rs73780683 | 1.00[EUR][1000 genomes] |
| rs9326975 | 1.00[EUR][1000 genomes] |
| rs9654524 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868915 | chr5:114723371-115252527 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024641 | chr5:115030110-115123474 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021139 | chr5:115036724-115131280 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv949677 | chr5:115104829-115496168 | Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 5 | nsv882734 | chr5:115112928-115130906 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:115120000-115120200 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr5:115120000-115121600 | Enhancers | Liver | Liver |
