Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115113442..115116376-chr5:115135444..115138235,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10036657	1.00[EUR][1000 genomes]
rs10052079	1.00[EUR][1000 genomes]
rs10054972	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058994	1.00[EUR][1000 genomes]
rs10059199	1.00[EUR][1000 genomes]
rs10067222	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070325	1.00[EUR][1000 genomes]
rs10074061	1.00[EUR][1000 genomes]
rs10074066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075816	1.00[EUR][1000 genomes]
rs10478262	1.00[EUR][1000 genomes]
rs10519428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519429	1.00[EUR][1000 genomes]
rs11959669	1.00[EUR][1000 genomes]
rs17138236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968365	1.00[EUR][1000 genomes]
rs28420368	1.00[EUR][1000 genomes]
rs4920893	1.00[EUR][1000 genomes]
rs4921029	1.00[EUR][1000 genomes]
rs4921030	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861998	1.00[EUR][1000 genomes]
rs6872587	1.00[EUR][1000 genomes]
rs6875708	1.00[EUR][1000 genomes]
rs73265480	1.00[EUR][1000 genomes]
rs73265491	1.00[EUR][1000 genomes]
rs73780683	1.00[EUR][1000 genomes]
rs9326975	1.00[EUR][1000 genomes]
rs9654524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115130400-115138400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:115131400-115137800	Weak transcription	Fetal Brain Female	brain
3	chr5:115131400-115149200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:115131800-115137800	Weak transcription	Aorta	Aorta
5	chr5:115132800-115137800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:115132800-115137800	Weak transcription	Placenta	Placenta
7	chr5:115133000-115138600	Enhancers	Liver	Liver
8	chr5:115134200-115149600	Weak transcription	Ovary	ovary
9	chr5:115134400-115146200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:115134400-115147000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:115134600-115138000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:115134600-115140800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:115135200-115138600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:115135400-115136600	Weak transcription	HepG2	liver
15	chr5:115135400-115138800	Weak transcription	Brain Germinal Matrix	brain

Quick Search: