Variant report

Variant	rs10046194
Chromosome Location	chr6:133890506-133890507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133889734..133891144-chr6:134158380..134159654,7	MCF-7	breast:
2	chr6:133889418..133890706-chr6:134237196..134238666,16	MCF-7	breast:
3	chr6:133889876..133890962-chr6:134242032..134242955,3	K562	blood:
4	chr6:133889747..133890633-chr6:134236028..134236793,2	K562	blood:
5	chr6:133889999..133890703-chr6:134242040..134243121,5	MCF-7	breast:
6	chr6:133889773..133890904-chr6:134156877..134157705,5	MCF-7	breast:
7	chr6:133889714..133890548-chr6:134237352..134238167,5	K562	blood:
8	chr6:133889749..133890690-chr6:134242136..134243019,4	MCF-7	breast:
9	chr6:133889774..133890628-chr6:134158616..134159373,4	MCF-7	breast:

No data

rs_ID	r²[population]
rs10046192	1.00[ASN][1000 genomes]
rs10046269	1.00[ASN][1000 genomes]
rs6912431	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6912460	0.83[ASN][1000 genomes]
rs73776049	1.00[ASN][1000 genomes]
rs73776051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9483589	0.81[ASN][1000 genomes]
rs9493639	0.81[ASN][1000 genomes]
rs9493641	0.81[ASN][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133889600-133890800	Active TSS	Ovary	ovary
2	chr6:133889600-133891000	Enhancers	Gastric	stomach
3	chr6:133889800-133891000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:133889800-133891000	Active TSS	Right Atrium	heart
5	chr6:133889800-133891000	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:133890000-133890600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:133890000-133890600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:133890000-133890600	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr6:133890000-133890800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:133890000-133890800	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:133890000-133890800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:133890000-133890800	Active TSS	Stomach Smooth Muscle	stomach
13	chr6:133890000-133891000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:133890000-133891000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:133890000-133891000	Active TSS	Brain Anterior Caudate	brain
16	chr6:133890000-133891000	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:133890000-133891000	Active TSS	Brain Substantia Nigra	brain
18	chr6:133890000-133891200	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:133890200-133890600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:133890200-133890600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:133890200-133890600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr6:133890200-133890600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:133890200-133890600	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr6:133890200-133890600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:133890200-133890600	Active TSS	Brain Angular Gyrus	brain
26	chr6:133890200-133890600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:133890200-133890600	Flanking Active TSS	Fetal Intestine Small	intestine
28	chr6:133890200-133890600	Active TSS	Fetal Lung	lung
29	chr6:133890200-133890600	Active TSS	HepG2	liver
30	chr6:133890200-133890600	Active TSS	NHDF-Ad	bronchial
31	chr6:133890200-133890800	Active TSS	H1 Cell Line	embryonic stem cell
32	chr6:133890200-133890800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:133890200-133890800	Active TSS	Aorta	Aorta
34	chr6:133890200-133890800	Flanking Bivalent TSS/Enh	Liver	Liver
35	chr6:133890200-133890800	Active TSS	Brain Germinal Matrix	brain
36	chr6:133890200-133890800	Active TSS	Colon Smooth Muscle	Colon
37	chr6:133890200-133890800	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:133890200-133890800	Active TSS	Fetal Brain Female	brain
39	chr6:133890200-133890800	Active TSS	Fetal Intestine Large	intestine
40	chr6:133890200-133890800	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr6:133890200-133890800	Active TSS	Fetal Stomach	stomach
42	chr6:133890200-133890800	Active TSS	Psoas Muscle	Psoas
43	chr6:133890200-133890800	Active TSS	Rectal Smooth Muscle	rectum
44	chr6:133890200-133890800	Active TSS	Right Ventricle	heart
45	chr6:133890200-133890800	Flanking Active TSS	HUVEC	blood vessel
46	chr6:133890200-133891000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:133890200-133891000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:133890200-133891000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:133890200-133891000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:133890200-133891000	Active TSS	Brain Hippocampus Middle	brain

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