Variant report

Variant	rs10046269
Chromosome Location	chr6:133890195-133890196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133889734..133891144-chr6:134158380..134159654,7	MCF-7	breast:
2	chr6:133889418..133890706-chr6:134237196..134238666,16	MCF-7	breast:
3	chr6:133889876..133890962-chr6:134242032..134242955,3	K562	blood:
4	chr6:133889747..133890633-chr6:134236028..134236793,2	K562	blood:
5	chr6:133889999..133890703-chr6:134242040..134243121,5	MCF-7	breast:
6	chr6:133889773..133890904-chr6:134156877..134157705,5	MCF-7	breast:
7	chr6:133889714..133890548-chr6:134237352..134238167,5	K562	blood:
8	chr6:133889749..133890690-chr6:134242136..134243019,4	MCF-7	breast:
9	chr6:133889774..133890628-chr6:134158616..134159373,4	MCF-7	breast:

No data

rs_ID	r²[population]
rs10046192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046194	1.00[ASN][1000 genomes]
rs11969406	1.00[EUR][1000 genomes]
rs11969455	1.00[EUR][1000 genomes]
rs17062425	1.00[EUR][1000 genomes]
rs17062451	1.00[EUR][1000 genomes]
rs17062457	1.00[EUR][1000 genomes]
rs3777820	1.00[EUR][1000 genomes]
rs3777876	1.00[MEX][hapmap]
rs3777881	1.00[MEX][hapmap]
rs58720665	1.00[EUR][1000 genomes]
rs6905230	1.00[EUR][1000 genomes]
rs6912096	1.00[EUR][1000 genomes]
rs6912431	0.96[ASN][1000 genomes]
rs6912460	0.83[ASN][1000 genomes]
rs6919264	1.00[EUR][1000 genomes]
rs73776049	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776051	1.00[ASN][1000 genomes]
rs7750265	1.00[MEX][hapmap]
rs7750331	1.00[EUR][1000 genomes]
rs7750637	1.00[EUR][1000 genomes]
rs7754602	1.00[EUR][1000 genomes]
rs7755047	1.00[EUR][1000 genomes]
rs7775362	1.00[EUR][1000 genomes]
rs9483589	0.81[ASN][1000 genomes]
rs9493639	0.81[ASN][1000 genomes]
rs9493641	0.81[ASN][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133888400-133890200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133888400-133890200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:133888400-133890200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:133888400-133890200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:133888400-133890200	Enhancers	Osteobl	bone
6	chr6:133888600-133890400	Enhancers	Placenta	Placenta
7	chr6:133889000-133890200	Weak transcription	Hela-S3	cervix
8	chr6:133889000-133890200	Weak transcription	NHDF-Ad	bronchial
9	chr6:133889000-133890400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:133889000-133890400	Weak transcription	HSMM	muscle
11	chr6:133889600-133890200	Weak transcription	A549	lung
12	chr6:133889600-133890800	Active TSS	Ovary	ovary
13	chr6:133889600-133891000	Enhancers	Gastric	stomach
14	chr6:133889800-133890200	Enhancers	Fetal Muscle Leg	muscle
15	chr6:133889800-133890400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:133889800-133891000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:133889800-133891000	Active TSS	Right Atrium	heart
18	chr6:133889800-133891000	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr6:133890000-133890200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:133890000-133890200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:133890000-133890200	Bivalent Enhancer	Liver	Liver
22	chr6:133890000-133890200	Enhancers	Colon Smooth Muscle	Colon
23	chr6:133890000-133890200	Enhancers	Fetal Intestine Small	intestine
24	chr6:133890000-133890200	Flanking Active TSS	Fetal Kidney	kidney
25	chr6:133890000-133890200	Enhancers	Fetal Stomach	stomach
26	chr6:133890000-133890400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:133890000-133890400	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr6:133890000-133890400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:133890000-133890400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:133890000-133890400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:133890000-133890400	Active TSS	Adipose Nuclei	Adipose
32	chr6:133890000-133890400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:133890000-133890600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr6:133890000-133890600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:133890000-133890600	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr6:133890000-133890800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:133890000-133890800	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:133890000-133890800	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr6:133890000-133890800	Active TSS	Stomach Smooth Muscle	stomach
40	chr6:133890000-133891000	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:133890000-133891000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:133890000-133891000	Active TSS	Brain Anterior Caudate	brain
43	chr6:133890000-133891000	Active TSS	Brain Cingulate Gyrus	brain
44	chr6:133890000-133891000	Active TSS	Brain Substantia Nigra	brain
45	chr6:133890000-133891200	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links