Variant report

Variant	rs6912460
Chromosome Location	chr6:133895376-133895377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10046192	0.83[ASN][1000 genomes]
rs10046194	0.83[ASN][1000 genomes]
rs10046269	0.83[ASN][1000 genomes]
rs11757578	0.99[EUR][1000 genomes]
rs2327358	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56215630	1.00[EUR][1000 genomes]
rs58342792	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911916	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73776049	0.83[ASN][1000 genomes]
rs73776051	0.83[ASN][1000 genomes]
rs7757204	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133891200-133895400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:133892200-133895400	Weak transcription	A549	lung
3	chr6:133893800-133898400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:133894800-133896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:133895200-133895400	Enhancers	Fetal Lung	lung
6	chr6:133895200-133895600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133895200-133895600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:133895200-133895600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:133895200-133895600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:133895200-133895600	Enhancers	NHDF-Ad	bronchial
11	chr6:133895200-133895800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:133895200-133895800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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