Variant report

Variant	rs10046213
Chromosome Location	chr6:33704194-33704195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33695701..33698175-chr6:33702130..33704789,2	K562	blood:
2	chr6:33704170..33706170-chr6:33708932..33711756,3	MCF-7	breast:
3	chr6:33704170..33706056-chr6:33712043..33713593,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11967839	0.82[EUR][1000 genomes]
rs34252064	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57657732	1.00[ASN][1000 genomes]
rs57663844	1.00[ASN][1000 genomes]
rs58695034	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635101	1.00[ASN][1000 genomes]
rs6914945	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915878	0.92[EUR][1000 genomes]
rs6931761	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410178	1.00[ASN][1000 genomes]
rs73410198	1.00[ASN][1000 genomes]
rs7752152	1.00[ASN][1000 genomes]
rs7755961	1.00[ASN][1000 genomes]
rs9461902	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:33690800-33708200	Weak transcription	Gastric	stomach
4	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:33699200-33710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:33699800-33708000	Weak transcription	Fetal Lung	lung
12	chr6:33700000-33705000	Weak transcription	Pancreas	Pancrea
13	chr6:33700200-33706600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:33700400-33707400	Weak transcription	Lung	lung
15	chr6:33700600-33704600	Weak transcription	Right Atrium	heart
16	chr6:33700600-33705200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:33700600-33707200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:33701000-33705400	Weak transcription	Liver	Liver
19	chr6:33701200-33704800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:33701400-33705000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:33702000-33710000	Genic enhancers	HSMM	muscle
22	chr6:33702200-33706200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:33702600-33704600	Weak transcription	Placenta	Placenta
24	chr6:33703000-33704400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:33703000-33704600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:33703200-33704800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:33703200-33704800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:33703200-33705000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:33703400-33705200	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:33703400-33705800	Weak transcription	Psoas Muscle	Psoas
31	chr6:33703400-33706800	Weak transcription	Spleen	Spleen
32	chr6:33703600-33704400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:33703600-33704400	Weak transcription	Left Ventricle	heart
34	chr6:33703600-33704600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:33703600-33704600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:33703600-33704600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:33703600-33704600	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:33703600-33704600	Weak transcription	Right Ventricle	heart
39	chr6:33703600-33705000	Weak transcription	Brain Anterior Caudate	brain
40	chr6:33703800-33704600	Weak transcription	HSMMtube	muscle
41	chr6:33703800-33704800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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