Variant report

Variant	rs9461902
Chromosome Location	chr6:33701127-33701128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33699067..33701380-chr6:33760767..33763233,2	MCF-7	breast:
2	chr12:115690369..115693198-chr6:33698849..33701409,2	MCF-7	breast:
3	chr6:33700010..33701892-chr6:33765256..33768196,2	MCF-7	breast:
4	chr6:33681912..33682822-chr6:33700653..33701368,4	MCF-7	breast:
5	chr6:33694998..33697623-chr6:33697893..33701266,3	K562	blood:
6	chr6:33699163..33701430-chr6:33753710..33757640,3	MCF-7	breast:
7	chr6:33700581..33702116-chr6:33711630..33713944,2	K562	blood:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10046213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967839	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs2094349	1.00[CHB][hapmap]
rs2296328	0.89[YRI][hapmap]
rs2296331	0.88[YRI][hapmap]
rs34252064	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525623	1.00[CHB][hapmap]
rs572708	1.00[CHB][hapmap]
rs57657732	1.00[ASN][1000 genomes]
rs57663844	1.00[ASN][1000 genomes]
rs58695034	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635101	1.00[ASN][1000 genomes]
rs6914945	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915878	0.92[EUR][1000 genomes]
rs6931761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410178	1.00[ASN][1000 genomes]
rs73410198	1.00[ASN][1000 genomes]
rs7752152	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7755961	1.00[ASN][1000 genomes]
rs791900	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:33690800-33708200	Weak transcription	Gastric	stomach
4	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:33693400-33701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:33695000-33702400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:33698200-33701600	Genic enhancers	Left Ventricle	heart
13	chr6:33698200-33702400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:33698400-33703000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:33698400-33703400	Strong transcription	Spleen	Spleen
16	chr6:33698600-33701200	Genic enhancers	Brain Hippocampus Middle	brain
17	chr6:33699200-33710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:33699400-33701200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:33699400-33703600	Genic enhancers	Right Ventricle	heart
20	chr6:33699600-33701200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:33699800-33708000	Weak transcription	Fetal Lung	lung
22	chr6:33700000-33701600	Genic enhancers	Placenta	Placenta
23	chr6:33700000-33701600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
24	chr6:33700000-33705000	Weak transcription	Pancreas	Pancrea
25	chr6:33700200-33701200	Enhancers	K562	blood
26	chr6:33700200-33706600	Weak transcription	Fetal Intestine Large	intestine
27	chr6:33700400-33701200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:33700400-33701200	Enhancers	NHEK	skin
29	chr6:33700400-33701400	Enhancers	NHLF	lung
30	chr6:33700400-33701600	Genic enhancers	Muscle Satellite Cultured Cells	--
31	chr6:33700400-33701600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:33700400-33707400	Weak transcription	Lung	lung
33	chr6:33700600-33701200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:33700600-33701200	Strong transcription	HSMM	muscle
35	chr6:33700600-33701400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr6:33700600-33701400	Enhancers	HepG2	liver
37	chr6:33700600-33701600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
38	chr6:33700600-33703800	Strong transcription	HSMMtube	muscle
39	chr6:33700600-33704600	Weak transcription	Right Atrium	heart
40	chr6:33700600-33705200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:33700600-33707200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:33700800-33701600	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr6:33700800-33701600	Genic enhancers	Fetal Muscle Leg	muscle
44	chr6:33700800-33703600	Strong transcription	Brain Substantia Nigra	brain
45	chr6:33700800-33703800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:33701000-33701400	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr6:33701000-33701400	Enhancers	Psoas Muscle	Psoas
48	chr6:33701000-33701600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:33701000-33701600	Enhancers	Fetal Brain Female	brain
50	chr6:33701000-33702200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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