Variant report

Variant	rs6914945
Chromosome Location	chr6:33683215-33683216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33682630..33685096-chr6:33696918..33698480,2	K562	blood:
2	chr6:33680227..33683293-chr6:33684221..33688907,5	K562	blood:
3	chr6:33683155..33686367-chr6:33732476..33736646,4	MCF-7	breast:
4	chr6:33682318..33683476-chr6:33729673..33730365,3	MCF-7	breast:
5	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
6	chr6:33681908..33683361-chr6:33729732..33730584,6	MCF-7	breast:
7	chr6:33681000..33683302-chr6:33729065..33730662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10046213	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967839	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34252064	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57657732	1.00[ASN][1000 genomes]
rs57663844	1.00[ASN][1000 genomes]
rs58695034	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635101	1.00[ASN][1000 genomes]
rs6915878	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6931761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410178	1.00[ASN][1000 genomes]
rs73410198	1.00[ASN][1000 genomes]
rs7752152	1.00[ASN][1000 genomes]
rs7755961	1.00[ASN][1000 genomes]
rs9461902	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33679800-33685000	Weak transcription	Lung	lung
2	chr6:33679800-33685600	Weak transcription	Placenta	Placenta
3	chr6:33680000-33683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:33680000-33683800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:33680000-33684000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:33680000-33684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:33680000-33684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:33680000-33684000	Weak transcription	Esophagus	oesophagus
9	chr6:33680000-33684000	Weak transcription	Gastric	stomach
10	chr6:33680000-33684000	Weak transcription	Left Ventricle	heart
11	chr6:33680000-33684000	Weak transcription	HMEC	breast
12	chr6:33680000-33684000	Weak transcription	NHEK	skin
13	chr6:33680000-33684200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:33680000-33684200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:33680000-33684200	Weak transcription	Fetal Lung	lung
16	chr6:33680000-33684200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:33680000-33684400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:33680000-33684400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:33680000-33684600	Weak transcription	Fetal Brain Male	brain
20	chr6:33680000-33684600	Weak transcription	Fetal Kidney	kidney
21	chr6:33680000-33684800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:33680000-33684800	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:33680000-33684800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:33680000-33684800	Weak transcription	NHLF	lung
25	chr6:33680000-33685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:33680000-33685000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:33680000-33685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:33680000-33685000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:33680000-33685200	Weak transcription	Right Atrium	heart
32	chr6:33680000-33686000	Weak transcription	Right Ventricle	heart
33	chr6:33680000-33689400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:33680000-33690000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:33680000-33690200	Weak transcription	Psoas Muscle	Psoas
36	chr6:33680000-33693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:33680000-33695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:33680000-33695800	Weak transcription	Spleen	Spleen
39	chr6:33680000-33696200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:33680000-33698400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
42	chr6:33680200-33684200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:33680200-33685200	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:33681600-33685800	Enhancers	HepG2	liver
45	chr6:33681800-33689200	Enhancers	Pancreas	Pancrea
46	chr6:33682600-33684000	Weak transcription	Liver	Liver
47	chr6:33682600-33686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:33683000-33686600	Enhancers	Stomach Mucosa	stomach
49	chr6:33683200-33686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:33683200-33686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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