Variant report

Variant	rs57663844
Chromosome Location	chr6:33758852-33758853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:33758642-33759203	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr6:33758815-33759365	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr6:33758757-33759197	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr6:33758787-33759238	HepG2	liver:	n/a	n/a
5	NANOG	chr6:33758669-33759118	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33758412..33760501-chr6:33767524..33770306,2	MCF-7	breast:
2	chr6:33758565..33760342-chr6:33771227..33773397,2	MCF-7	breast:

Variant related genes	Relation type
LEMD2	TF binding region
ENSG00000096395	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10046213	1.00[ASN][1000 genomes]
rs2281817	0.81[AFR][1000 genomes]
rs2281818	0.81[AFR][1000 genomes]
rs34252064	1.00[ASN][1000 genomes]
rs57657732	1.00[ASN][1000 genomes]
rs58695034	1.00[ASN][1000 genomes]
rs60635101	1.00[ASN][1000 genomes]
rs6914945	1.00[ASN][1000 genomes]
rs6931761	1.00[ASN][1000 genomes]
rs73410178	1.00[ASN][1000 genomes]
rs73410198	1.00[ASN][1000 genomes]
rs7752152	1.00[ASN][1000 genomes]
rs7755961	1.00[ASN][1000 genomes]
rs9461902	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757000-33760000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:33757000-33760200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33757200-33759600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33757200-33760000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:33757400-33759000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:33757400-33759400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:33757400-33759400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:33757400-33761400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:33757600-33759000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:33757600-33759000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:33757600-33759200	Weak transcription	Thymus	Thymus
12	chr6:33757600-33759400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:33757600-33759400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:33757600-33759800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:33757600-33759800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:33757600-33760200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:33757600-33760800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:33757600-33761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:33757600-33762400	Weak transcription	A549	lung
20	chr6:33757600-33763600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
22	chr6:33757800-33759000	Enhancers	HSMMtube	muscle
23	chr6:33757800-33759200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:33757800-33759200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:33758000-33760000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:33758000-33762400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:33758200-33759400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:33758400-33759000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:33758400-33759400	Enhancers	Fetal Muscle Trunk	muscle
30	chr6:33758400-33763600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:33758600-33759200	Enhancers	HSMM	muscle
32	chr6:33758800-33759000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:33758800-33759000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:33758800-33759000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:33758800-33759000	Enhancers	Gastric	stomach
36	chr6:33758800-33759200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr6:33758800-33760000	Enhancers	Cortex derived primary cultured neurospheres	brain

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