Variant report

Variant	rs10049124
Chromosome Location	chr3:34149458-34149459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11715451	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715502	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717932	1.00[CHB][hapmap]
rs11921797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62250185	0.95[EUR][1000 genomes]
rs73050728	0.95[EUR][1000 genomes]
rs73055519	0.88[EUR][1000 genomes]
rs7628777	0.87[EUR][1000 genomes]
rs9809828	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9834233	0.89[EUR][1000 genomes]
rs9838608	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863160	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9865960	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868707	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881551	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10049124	CMTM8	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34147800-34151600	Enhancers	Thymus	Thymus
2	chr3:34147800-34152600	Enhancers	Fetal Thymus	thymus
3	chr3:34147800-34153000	Enhancers	Dnd41	blood
4	chr3:34148400-34149600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:34148400-34149600	Flanking Active TSS	GM12878-XiMat	blood
6	chr3:34148400-34149800	Enhancers	Primary B cells from cord blood	blood
7	chr3:34148400-34149800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:34148600-34149600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:34148600-34149800	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:34149200-34149600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:34149400-34151000	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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