Variant report

Variant	rs7628777
Chromosome Location	chr3:34114983-34114984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34110515..34112587-chr3:34114400..34116308,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10049124	0.87[EUR][1000 genomes]
rs11715451	0.83[EUR][1000 genomes]
rs11715502	0.84[EUR][1000 genomes]
rs11717932	1.00[CHB][hapmap]
rs11921797	0.88[EUR][1000 genomes]
rs13063086	1.00[CHB][hapmap]
rs13083357	1.00[CHB][hapmap]
rs4374481	1.00[ASN][1000 genomes]
rs62250185	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798950	1.00[ASN][1000 genomes]
rs73050728	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055519	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7621412	1.00[CHB][hapmap]
rs9809828	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834233	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838608	0.83[EUR][1000 genomes]
rs9863160	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865960	0.82[EUR][1000 genomes]
rs9868707	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881551	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34110400-34115800	Enhancers	Thymus	Thymus
2	chr3:34110800-34115600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:34111000-34119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:34113800-34115600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:34114000-34115000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:34114200-34115000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:34114200-34115400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:34114200-34115600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:34114400-34115400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:34114400-34115600	Enhancers	Primary B cells from cord blood	blood
11	chr3:34114400-34115800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:34114400-34115800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:34114400-34116000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:34114400-34116000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:34114400-34119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:34114600-34115000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:34114600-34115000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:34114600-34115400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:34114600-34115600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:34114600-34115600	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:34114600-34115800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:34114600-34115800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:34114800-34115600	Weak transcription	Fetal Thymus	thymus
24	chr3:34114800-34116400	Enhancers	GM12878-XiMat	blood
25	chr3:34114800-34119200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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