Variant report

Variant	rs4374481
Chromosome Location	chr3:34061466-34061467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10440105	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11717932	1.00[CHB][hapmap]
rs12715234	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4599247	0.90[CEU][hapmap]
rs4678631	0.85[EUR][1000 genomes]
rs62250185	1.00[ASN][1000 genomes]
rs6798950	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050728	1.00[ASN][1000 genomes]
rs7628777	1.00[ASN][1000 genomes]
rs9809828	1.00[ASN][1000 genomes]
rs9819006	0.85[EUR][1000 genomes]
rs9823050	0.83[EUR][1000 genomes]
rs9834233	1.00[ASN][1000 genomes]
rs9863160	1.00[ASN][1000 genomes]
rs9868707	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34055600-34075000	Weak transcription	K562	blood
2	chr3:34058800-34063800	Enhancers	Dnd41	blood
3	chr3:34058800-34064600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:34058800-34064800	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:34059000-34062000	Weak transcription	Fetal Brain Female	brain
6	chr3:34059000-34062400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:34059200-34062600	Enhancers	Thymus	Thymus
8	chr3:34059200-34063000	Enhancers	Fetal Thymus	thymus
9	chr3:34059600-34062000	Weak transcription	Fetal Brain Male	brain
10	chr3:34060000-34062200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:34060000-34062800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:34060800-34061800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:34060800-34065600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:34061200-34062400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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