Variant report

Variant	rs12715234
Chromosome Location	chr3:34059329-34059330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10212395	0.91[ASN][1000 genomes]
rs10440105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780020	0.93[ASN][1000 genomes]
rs10865851	0.93[ASN][1000 genomes]
rs1109973	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11707844	0.91[ASN][1000 genomes]
rs11924658	0.88[ASN][1000 genomes]
rs1881938	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4045199	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4075756	1.00[ASN][1000 genomes]
rs4234228	0.91[ASN][1000 genomes]
rs4234229	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4234230	0.91[ASN][1000 genomes]
rs4270459	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4293663	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4355233	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4374481	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4377444	0.95[ASN][1000 genomes]
rs4411835	0.95[ASN][1000 genomes]
rs4525815	0.93[ASN][1000 genomes]
rs4530479	0.95[ASN][1000 genomes]
rs4550783	0.95[ASN][1000 genomes]
rs4678628	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4678631	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6550241	0.93[ASN][1000 genomes]
rs6763221	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776036	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782895	0.93[ASN][1000 genomes]
rs9817642	0.95[ASN][1000 genomes]
rs9819006	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823050	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9843038	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9845173	0.95[ASN][1000 genomes]
rs9866710	0.93[ASN][1000 genomes]
rs9868204	0.95[ASN][1000 genomes]
rs9870373	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9871398	0.95[ASN][1000 genomes]
rs9875057	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34054000-34059600	Enhancers	Fetal Brain Male	brain
2	chr3:34055600-34075000	Weak transcription	K562	blood
3	chr3:34056800-34060000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:34056800-34060000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:34057000-34060000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr3:34057200-34059800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:34057200-34060600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:34057400-34059400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:34057400-34059800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:34057400-34060000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:34057400-34060000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:34057400-34060200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:34057600-34059400	Enhancers	HMEC	breast
14	chr3:34057600-34060800	Enhancers	Primary B cells from peripheral blood	blood
15	chr3:34057800-34059400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:34058200-34059400	Enhancers	Primary B cells from cord blood	blood
17	chr3:34058800-34060400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:34058800-34063800	Enhancers	Dnd41	blood
19	chr3:34058800-34064600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:34058800-34064800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:34059000-34062000	Weak transcription	Fetal Brain Female	brain
22	chr3:34059000-34062400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:34059200-34059400	Enhancers	GM12878-XiMat	blood
24	chr3:34059200-34059400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:34059200-34060200	Enhancers	Primary T cells from cord blood	blood
26	chr3:34059200-34060800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:34059200-34062600	Enhancers	Thymus	Thymus
28	chr3:34059200-34063000	Enhancers	Fetal Thymus	thymus

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