Variant report

Variant	rs6550241
Chromosome Location	chr3:34012971-34012972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212395	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10440105	0.89[ASN][1000 genomes]
rs10780020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1109973	0.98[ASN][1000 genomes]
rs11707844	0.98[ASN][1000 genomes]
rs11924658	0.95[ASN][1000 genomes]
rs12486443	0.80[MEX][hapmap]
rs12715234	0.93[ASN][1000 genomes]
rs13075028	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1881938	0.98[ASN][1000 genomes]
rs4045199	0.98[ASN][1000 genomes]
rs4075756	0.93[ASN][1000 genomes]
rs4234228	0.98[ASN][1000 genomes]
rs4234229	0.98[ASN][1000 genomes]
rs4234230	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4270459	0.98[ASN][1000 genomes]
rs4293663	0.87[ASN][1000 genomes]
rs4355233	0.98[ASN][1000 genomes]
rs4377444	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4411835	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4525815	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530479	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4550783	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4599247	1.00[GIH][hapmap]
rs4678628	0.98[ASN][1000 genomes]
rs4678631	0.93[ASN][1000 genomes]
rs6763221	1.00[ASN][1000 genomes]
rs6766292	0.98[ASN][1000 genomes]
rs6776036	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6782895	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817642	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819006	0.93[ASN][1000 genomes]
rs9823050	0.98[ASN][1000 genomes]
rs9843038	0.98[ASN][1000 genomes]
rs9845173	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866710	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9868204	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870373	0.93[ASN][1000 genomes]
rs9871398	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9875057	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6550241	GPD1L	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34012000-34013400	ZNF genes & repeats	Aorta	Aorta

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