Variant report
| Variant | rs11924658 |
|---|---|
| Chromosome Location | chr3:34016552-34016553 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:34013303..34015107-chr3:34015788..34018497,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10212395 | 0.89[ASN][1000 genomes] |
| rs10440105 | 0.84[ASN][1000 genomes] |
| rs10780020 | 0.95[ASN][1000 genomes] |
| rs10865851 | 0.95[ASN][1000 genomes] |
| rs1109973 | 0.93[ASN][1000 genomes] |
| rs11707844 | 0.93[ASN][1000 genomes] |
| rs11924534 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12715234 | 0.88[ASN][1000 genomes] |
| rs1881938 | 0.93[ASN][1000 genomes] |
| rs4045199 | 0.93[ASN][1000 genomes] |
| rs4075756 | 0.88[ASN][1000 genomes] |
| rs4234228 | 0.93[ASN][1000 genomes] |
| rs4234229 | 0.93[ASN][1000 genomes] |
| rs4234230 | 0.89[ASN][1000 genomes] |
| rs4270459 | 0.93[ASN][1000 genomes] |
| rs4293663 | 0.83[ASN][1000 genomes] |
| rs4355233 | 0.93[ASN][1000 genomes] |
| rs4377444 | 0.93[ASN][1000 genomes] |
| rs4411835 | 0.93[ASN][1000 genomes] |
| rs4525815 | 0.95[ASN][1000 genomes] |
| rs4530479 | 0.93[ASN][1000 genomes] |
| rs4550783 | 0.93[ASN][1000 genomes] |
| rs4678628 | 0.93[ASN][1000 genomes] |
| rs4678631 | 0.88[ASN][1000 genomes] |
| rs6550241 | 0.95[ASN][1000 genomes] |
| rs6763221 | 0.95[ASN][1000 genomes] |
| rs6766292 | 0.93[ASN][1000 genomes] |
| rs6776036 | 0.95[ASN][1000 genomes] |
| rs6782895 | 0.95[ASN][1000 genomes] |
| rs9817642 | 0.93[ASN][1000 genomes] |
| rs9819006 | 0.88[ASN][1000 genomes] |
| rs9823050 | 0.93[ASN][1000 genomes] |
| rs9843038 | 0.93[ASN][1000 genomes] |
| rs9845173 | 0.93[ASN][1000 genomes] |
| rs9866710 | 0.91[ASN][1000 genomes] |
| rs9868204 | 0.93[ASN][1000 genomes] |
| rs9870373 | 0.89[ASN][1000 genomes] |
| rs9871398 | 0.93[ASN][1000 genomes] |
| rs9875057 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv522881 | chr3:33736126-34241686 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34015000-34016800 | Weak transcription | K562 | blood |
