Variant report

Variant	rs9866710
Chromosome Location	chr3:34021986-34021987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34021912..34022467-chr3:34050930..34051824,2	MCF-7	breast:
2	chr3:34021708..34023803-chr3:34147360..34150233,3	MCF-7	breast:
3	chr3:34021551..34022550-chr3:34318530..34319319,6	MCF-7	breast:
4	chr3:34021903..34022478-chr3:34052503..34053135,2	MCF-7	breast:
5	chr3:34021801..34022436-chr3:34725109..34725617,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212395	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10440105	0.89[ASN][1000 genomes]
rs10780020	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10865851	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1109973	0.98[ASN][1000 genomes]
rs11707844	0.98[ASN][1000 genomes]
rs11924658	0.91[ASN][1000 genomes]
rs12715234	0.93[ASN][1000 genomes]
rs13075028	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1881938	0.98[ASN][1000 genomes]
rs4045199	0.98[ASN][1000 genomes]
rs4075756	0.93[ASN][1000 genomes]
rs4234228	0.98[ASN][1000 genomes]
rs4234229	0.98[ASN][1000 genomes]
rs4234230	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4270459	0.98[ASN][1000 genomes]
rs4293663	0.87[ASN][1000 genomes]
rs4355233	0.98[ASN][1000 genomes]
rs4377444	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4411835	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4525815	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4530479	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4550783	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4599247	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs4678628	0.98[ASN][1000 genomes]
rs4678631	0.93[ASN][1000 genomes]
rs6550241	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6763221	0.95[ASN][1000 genomes]
rs6766292	0.98[ASN][1000 genomes]
rs6776036	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6782895	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9817642	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819006	0.93[ASN][1000 genomes]
rs9823050	0.98[ASN][1000 genomes]
rs9843038	0.98[ASN][1000 genomes]
rs9845173	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9868204	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870373	0.93[ASN][1000 genomes]
rs9871398	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9875057	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34021800-34022200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:34021800-34022400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:34021800-34022600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links