Variant report

Variant	rs9871398
Chromosome Location	chr3:34045675-34045676
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34040006..34043601-chr3:34045113..34048519,3	MCF-7	breast:
2	chr3:34040069..34041825-chr3:34045439..34047491,2	K562	blood:
3	chr3:34044983..34046948-chr3:34049221..34051231,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10212395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10440105	0.91[ASN][1000 genomes]
rs10780020	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10865851	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109973	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11707844	0.95[ASN][1000 genomes]
rs11924658	0.93[ASN][1000 genomes]
rs12715234	0.95[ASN][1000 genomes]
rs13075028	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1881938	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4045199	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4075756	0.95[ASN][1000 genomes]
rs4234228	0.95[ASN][1000 genomes]
rs4234229	1.00[ASN][1000 genomes]
rs4234230	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4270459	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4293663	0.89[ASN][1000 genomes]
rs4355233	1.00[ASN][1000 genomes]
rs4377444	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411835	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525815	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4530479	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678628	1.00[ASN][1000 genomes]
rs4678631	0.95[ASN][1000 genomes]
rs6550241	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763221	0.98[ASN][1000 genomes]
rs6766292	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6776036	0.98[ASN][1000 genomes]
rs6782895	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9817642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819006	0.95[ASN][1000 genomes]
rs9823050	1.00[ASN][1000 genomes]
rs9843038	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9845173	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866710	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9868204	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870373	0.95[ASN][1000 genomes]
rs9875057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34040400-34049400	Weak transcription	K562	blood
2	chr3:34041200-34047400	Enhancers	HepG2	liver
3	chr3:34041800-34049400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:34043600-34048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:34044000-34045800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:34044000-34046000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:34044400-34049600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:34044600-34046600	Weak transcription	A549	lung
9	chr3:34045000-34046200	Weak transcription	Osteobl	bone
10	chr3:34045000-34055400	Enhancers	NHDF-Ad	bronchial
11	chr3:34045000-34055600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:34045200-34046000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:34045200-34046200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:34045400-34049400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:34045400-34050400	Enhancers	NHLF	lung
16	chr3:34045600-34045800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:34045600-34049400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:34045600-34049400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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