Variant report

Variant	rs4678628
Chromosome Location	chr3:34031094-34031095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212395	0.95[ASN][1000 genomes]
rs10440105	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10780020	0.98[ASN][1000 genomes]
rs10865851	0.98[ASN][1000 genomes]
rs1109973	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707844	0.95[ASN][1000 genomes]
rs11924658	0.93[ASN][1000 genomes]
rs12715234	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881938	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4045199	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075756	0.95[ASN][1000 genomes]
rs4234228	0.95[ASN][1000 genomes]
rs4234229	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234230	0.95[ASN][1000 genomes]
rs4270459	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293663	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377444	1.00[ASN][1000 genomes]
rs4411835	1.00[ASN][1000 genomes]
rs4525815	0.98[ASN][1000 genomes]
rs4530479	1.00[ASN][1000 genomes]
rs4550783	1.00[ASN][1000 genomes]
rs4599247	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4678631	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550241	0.98[ASN][1000 genomes]
rs6763221	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766292	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776036	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782895	0.98[ASN][1000 genomes]
rs6798950	0.82[EUR][1000 genomes]
rs9817642	1.00[ASN][1000 genomes]
rs9819006	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823050	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843038	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845173	1.00[ASN][1000 genomes]
rs9866710	0.98[ASN][1000 genomes]
rs9868204	1.00[ASN][1000 genomes]
rs9870373	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871398	1.00[ASN][1000 genomes]
rs9875057	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34030400-34031400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:34030400-34031400	Enhancers	Fetal Thymus	thymus
3	chr3:34030600-34031200	Enhancers	Thymus	Thymus
4	chr3:34030800-34031400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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