Variant report

Variant	rs1881938
Chromosome Location	chr3:34048041-34048042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34040006..34043601-chr3:34045113..34048519,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212395	0.95[ASN][1000 genomes]
rs10440105	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10780020	0.98[ASN][1000 genomes]
rs10865851	0.98[ASN][1000 genomes]
rs1109973	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707844	0.95[ASN][1000 genomes]
rs11924658	0.93[ASN][1000 genomes]
rs12715234	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4045199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075756	0.95[ASN][1000 genomes]
rs4234228	0.95[ASN][1000 genomes]
rs4234229	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234230	0.95[ASN][1000 genomes]
rs4270459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293663	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355233	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377444	1.00[ASN][1000 genomes]
rs4411835	1.00[ASN][1000 genomes]
rs4525815	0.98[ASN][1000 genomes]
rs4530479	1.00[ASN][1000 genomes]
rs4550783	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4599247	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4678628	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678631	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550241	0.98[ASN][1000 genomes]
rs6763221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776036	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782895	0.98[ASN][1000 genomes]
rs6798950	0.81[EUR][1000 genomes]
rs9817642	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9819006	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823050	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843038	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845173	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9866710	0.98[ASN][1000 genomes]
rs9868204	1.00[ASN][1000 genomes]
rs9870373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871398	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9875057	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34040400-34049400	Weak transcription	K562	blood
2	chr3:34041800-34049400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:34043600-34048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:34044400-34049600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:34045000-34055400	Enhancers	NHDF-Ad	bronchial
6	chr3:34045000-34055600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:34045400-34049400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:34045400-34050400	Enhancers	NHLF	lung
9	chr3:34045600-34049400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:34045600-34049400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:34045800-34048800	Enhancers	HSMM	muscle
12	chr3:34045800-34050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:34045800-34055400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:34046200-34054600	Enhancers	Osteobl	bone
15	chr3:34046600-34048200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:34046600-34048200	Enhancers	HSMMtube	muscle
17	chr3:34046600-34048600	Enhancers	A549	lung
18	chr3:34046800-34048800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:34046800-34048800	Enhancers	NH-A	brain
20	chr3:34046800-34051800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:34047000-34048400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:34047000-34050000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:34047200-34056000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:34047400-34049200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:34047400-34049600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:34047800-34048400	Enhancers	GM12878-XiMat	blood
27	chr3:34048000-34050800	Weak transcription	HepG2	liver

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