Variant report

Variant	rs9875057
Chromosome Location	chr3:34049668-34049669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34044983..34046948-chr3:34049221..34051231,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10440105	0.91[ASN][1000 genomes]
rs10780020	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10865851	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109973	1.00[ASN][1000 genomes]
rs11707844	0.95[ASN][1000 genomes]
rs11924658	0.93[ASN][1000 genomes]
rs12715234	0.95[ASN][1000 genomes]
rs13075028	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1881938	1.00[ASN][1000 genomes]
rs4045199	1.00[ASN][1000 genomes]
rs4075756	0.95[ASN][1000 genomes]
rs4234228	0.95[ASN][1000 genomes]
rs4234229	1.00[ASN][1000 genomes]
rs4234230	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4270459	1.00[ASN][1000 genomes]
rs4293663	0.89[ASN][1000 genomes]
rs4355233	1.00[ASN][1000 genomes]
rs4377444	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411835	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525815	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4530479	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599247	1.00[GIH][hapmap]
rs4678628	1.00[ASN][1000 genomes]
rs4678631	0.95[ASN][1000 genomes]
rs6550241	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763221	0.98[ASN][1000 genomes]
rs6766292	1.00[ASN][1000 genomes]
rs6776036	0.98[ASN][1000 genomes]
rs6782895	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9817642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819006	0.95[ASN][1000 genomes]
rs9823050	1.00[ASN][1000 genomes]
rs9843038	1.00[ASN][1000 genomes]
rs9845173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866710	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9868204	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870373	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9871398	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34045000-34055400	Enhancers	NHDF-Ad	bronchial
2	chr3:34045000-34055600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:34045400-34050400	Enhancers	NHLF	lung
4	chr3:34045800-34050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:34045800-34055400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:34046200-34054600	Enhancers	Osteobl	bone
7	chr3:34046800-34051800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:34047000-34050000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:34047200-34056000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:34048000-34050800	Weak transcription	HepG2	liver
11	chr3:34048400-34049800	Weak transcription	GM12878-XiMat	blood
12	chr3:34048600-34050200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:34048800-34051200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:34048800-34052800	Weak transcription	HSMMtube	muscle
15	chr3:34049200-34050200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:34049200-34050200	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:34049200-34050400	Enhancers	HSMM	muscle
18	chr3:34049200-34051400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:34049200-34051600	Enhancers	NH-A	brain
20	chr3:34049200-34055400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:34049400-34050000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:34049400-34050200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr3:34049400-34050200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:34049400-34050200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:34049400-34050200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:34049400-34050200	Enhancers	Dnd41	blood
27	chr3:34049400-34050400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr3:34049400-34050400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr3:34049400-34050400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:34049400-34050400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:34049400-34051200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:34049400-34051400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr3:34049400-34051400	Enhancers	K562	blood
34	chr3:34049400-34054600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:34049600-34050200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:34049600-34050200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:34049600-34050200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr3:34049600-34050200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:34049600-34050200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:34049600-34050200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr3:34049600-34050800	Enhancers	A549	lung

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