Variant report

Variant	rs9843038
Chromosome Location	chr3:34043597-34043598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34040006..34043601-chr3:34045113..34048519,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212395	0.95[ASN][1000 genomes]
rs10440105	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10780020	0.98[ASN][1000 genomes]
rs10865851	0.98[ASN][1000 genomes]
rs1109973	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707844	0.95[ASN][1000 genomes]
rs11924658	0.93[ASN][1000 genomes]
rs12715234	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881938	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4045199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075756	0.95[ASN][1000 genomes]
rs4234228	0.95[ASN][1000 genomes]
rs4234229	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234230	0.95[ASN][1000 genomes]
rs4270459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293663	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355233	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377444	1.00[ASN][1000 genomes]
rs4411835	1.00[ASN][1000 genomes]
rs4525815	0.98[ASN][1000 genomes]
rs4530479	1.00[ASN][1000 genomes]
rs4550783	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4599247	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4678628	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678631	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550241	0.98[ASN][1000 genomes]
rs6763221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766292	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776036	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782895	0.98[ASN][1000 genomes]
rs6798950	0.81[EUR][1000 genomes]
rs9817642	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9819006	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823050	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845173	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9866710	0.98[ASN][1000 genomes]
rs9868204	1.00[ASN][1000 genomes]
rs9870373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871398	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9875057	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34035800-34045400	Weak transcription	NHLF	lung
2	chr3:34040400-34049400	Weak transcription	K562	blood
3	chr3:34041200-34044400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:34041200-34044600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:34041200-34047400	Enhancers	HepG2	liver
6	chr3:34041400-34045200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:34041800-34043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:34041800-34049400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:34042000-34044000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:34042400-34044600	Enhancers	A549	lung
11	chr3:34042800-34043800	Enhancers	Hela-S3	cervix
12	chr3:34043000-34045600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:34043200-34044400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:34043400-34044400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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