Variant report

Variant	rs9881551
Chromosome Location	chr3:34113130-34113131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34106827..34108802-chr3:34112121..34113818,2	K562	blood:
2	chr3:34109758..34112123-chr3:34112273..34114372,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10049124	0.85[EUR][1000 genomes]
rs11715451	0.82[EUR][1000 genomes]
rs11715502	0.83[EUR][1000 genomes]
rs11717932	1.00[CHB][hapmap]
rs11921797	0.87[EUR][1000 genomes]
rs62250185	0.82[EUR][1000 genomes]
rs73050728	0.82[EUR][1000 genomes]
rs73055519	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628777	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9809828	0.93[EUR][1000 genomes]
rs9834233	0.88[EUR][1000 genomes]
rs9838608	0.82[EUR][1000 genomes]
rs9863160	0.82[EUR][1000 genomes]
rs9865960	0.81[EUR][1000 genomes]
rs9868707	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34110000-34114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:34110000-34114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:34110200-34114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:34110400-34114800	Enhancers	Fetal Thymus	thymus
5	chr3:34110400-34115800	Enhancers	Thymus	Thymus
6	chr3:34110800-34114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:34110800-34115600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:34111000-34114400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:34111000-34119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:34112000-34113600	Enhancers	GM12878-XiMat	blood
11	chr3:34112200-34113600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:34112200-34114200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:34112400-34113600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:34112600-34113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:34112600-34113200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:34112600-34113400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:34112800-34113600	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:34112800-34113800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:34112800-34114200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:34112800-34114400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:34112800-34114400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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