Variant report

Variant	rs73055519
Chromosome Location	chr3:34112594-34112595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10049124	0.88[EUR][1000 genomes]
rs11715451	0.85[EUR][1000 genomes]
rs11715502	0.86[EUR][1000 genomes]
rs11921797	0.90[EUR][1000 genomes]
rs62250185	0.85[EUR][1000 genomes]
rs73050728	0.85[EUR][1000 genomes]
rs7628777	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9809828	0.93[EUR][1000 genomes]
rs9834233	0.88[EUR][1000 genomes]
rs9838608	0.85[EUR][1000 genomes]
rs9863160	0.85[EUR][1000 genomes]
rs9865960	0.84[EUR][1000 genomes]
rs9868707	0.85[EUR][1000 genomes]
rs9881551	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34108200-34112800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34110000-34114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:34110000-34114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:34110200-34114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:34110400-34112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:34110400-34114800	Enhancers	Fetal Thymus	thymus
7	chr3:34110400-34115800	Enhancers	Thymus	Thymus
8	chr3:34110800-34114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:34110800-34115600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:34111000-34114400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:34111000-34119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:34111600-34112800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:34111800-34112600	Enhancers	Dnd41	blood
14	chr3:34112000-34113600	Enhancers	GM12878-XiMat	blood
15	chr3:34112200-34112600	Bivalent Enhancer	HSMMtube	muscle
16	chr3:34112200-34113600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:34112200-34114200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:34112400-34112800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:34112400-34113600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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