Variant report

Variant	rs10052931
Chromosome Location	chr5:145195930-145195931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11742313	0.95[EUR][1000 genomes]
rs1549900	0.95[EUR][1000 genomes]
rs2029486	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2087562	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs340044	0.90[EUR][1000 genomes]
rs340046	0.90[EUR][1000 genomes]
rs340047	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs394386	0.94[EUR][1000 genomes]
rs4334931	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4495235	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4529254	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs453090	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs663205	0.91[EUR][1000 genomes]
rs6870210	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6898776	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72816435	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7704574	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9716744	0.92[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
3	chr5:145162800-145198200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:145172800-145196200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
10	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:145177200-145209200	Weak transcription	NH-A	brain
15	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
17	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
18	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
19	chr5:145183400-145197200	Weak transcription	HMEC	breast
20	chr5:145183600-145197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
22	chr5:145185800-145202400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:145187000-145209200	Weak transcription	A549	lung
24	chr5:145187400-145197200	Weak transcription	Aorta	Aorta
25	chr5:145189200-145200000	Weak transcription	Osteobl	bone
26	chr5:145190200-145196600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:145191600-145199600	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:145191600-145206400	Weak transcription	Liver	Liver
29	chr5:145191800-145196000	Weak transcription	K562	blood
30	chr5:145191800-145199800	Weak transcription	HUVEC	blood vessel
31	chr5:145192000-145196400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:145192000-145203600	Weak transcription	Adipose Nuclei	Adipose
33	chr5:145192400-145203600	Weak transcription	Left Ventricle	heart
34	chr5:145192800-145200600	Weak transcription	Lung	lung
35	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:145193000-145204000	Weak transcription	Spleen	Spleen
37	chr5:145193200-145197400	Weak transcription	Fetal Heart	heart
38	chr5:145193800-145201400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr5:145193800-145202000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:145194000-145196800	Strong transcription	Fetal Stomach	stomach
41	chr5:145194000-145197000	Strong transcription	Fetal Intestine Small	intestine
42	chr5:145194000-145199600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:145194000-145201000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:145194200-145196000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr5:145194400-145196200	Strong transcription	Gastric	stomach
46	chr5:145194400-145198200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:145194400-145201800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr5:145194400-145201800	Strong transcription	Fetal Intestine Large	intestine
49	chr5:145194600-145197800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr5:145194800-145196000	Strong transcription	Ovary	ovary

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