Variant report

Variant	rs340047
Chromosome Location	chr5:145205460-145205461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:143583489..143584066-chr5:145205033..145205692,2	K562	blood:
2	chr5:145061166..145061878-chr5:145204948..145205851,2	MCF-7	breast:
3	chr5:145204103..145206946-chr5:145223103..145224870,2	MCF-7	breast:
4	chr5:145060890..145061796-chr5:145204861..145205861,3	K562	blood:
5	chr5:145196325..145201052-chr5:145202537..145206450,5	K562	blood:
6	chr5:145203763..145206199-chr5:145209923..145212863,2	K562	blood:
7	chr5:145204923..145206384-chr5:145428651..145429577,4	MCF-7	breast:
8	chr5:145204699..145206468-chr5:145210985..145212863,2	K562	blood:
9	chr10:26726457..26727272-chr5:145204981..145205774,2	MCF-7	breast:
10	chr20:30672058..30672975-chr5:145205189..145205892,2	MCF-7	breast:
11	chr5:143583009..143583617-chr5:145205259..145206134,2	MCF-7	breast:
12	chr5:145204945..145205572-chr5:145295722..145296233,2	K562	blood:
13	chr5:145081132..145081713-chr5:145205200..145205925,2	MCF-7	breast:
14	chr5:145205088..145205945-chr5:145266865..145267837,4	MCF-7	breast:
15	chr5:145060959..145061470-chr5:145205043..145205644,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000077420	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10052931	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11742313	0.96[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549900	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2029486	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2087562	0.96[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs340044	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs340046	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs394386	0.96[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs413654	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs4334931	0.89[EUR][1000 genomes]
rs4495235	0.90[EUR][1000 genomes]
rs4529254	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs453090	0.96[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs620327	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs663205	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs681582	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs6870210	0.96[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6898776	0.96[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816435	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7704574	0.84[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9716744	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
2	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
5	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:145177200-145209200	Weak transcription	NH-A	brain
9	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
11	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
12	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
13	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
14	chr5:145187000-145209200	Weak transcription	A549	lung
15	chr5:145191600-145206400	Weak transcription	Liver	Liver
16	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
19	chr5:145196200-145211800	Weak transcription	Gastric	stomach
20	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
21	chr5:145197800-145206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:145197800-145206600	Weak transcription	HMEC	breast
23	chr5:145197800-145206800	Weak transcription	HepG2	liver
24	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:145198000-145206400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr5:145198000-145206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:145198200-145206400	Weak transcription	K562	blood
29	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:145198600-145206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:145198800-145209000	Weak transcription	Ovary	ovary
32	chr5:145198800-145212000	Weak transcription	Aorta	Aorta
33	chr5:145201400-145209400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:145201400-145214200	Weak transcription	Lung	lung
35	chr5:145201800-145206600	Weak transcription	Fetal Intestine Large	intestine
36	chr5:145201800-145210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:145202000-145209000	Weak transcription	HUVEC	blood vessel
38	chr5:145204000-145208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:145204000-145209200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:145204000-145209600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:145204200-145206400	Weak transcription	Fetal Heart	heart
42	chr5:145204200-145207000	Weak transcription	Fetal Brain Male	brain
43	chr5:145204200-145209000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:145204200-145209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:145204200-145209200	Weak transcription	Fetal Lung	lung
46	chr5:145204200-145209600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:145205200-145205800	Enhancers	Fetal Intestine Small	intestine
48	chr5:145205200-145206000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr5:145205400-145209400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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