Variant report

Variant	rs413654
Chromosome Location	chr5:145204026-145204027
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11742313	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs2087562	0.91[CEU][hapmap];0.93[CHB][hapmap];0.90[YRI][hapmap]
rs340044	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs340046	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs340047	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs394386	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs4529254	0.92[CEU][hapmap];0.87[CHB][hapmap]
rs453090	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[YRI][hapmap]
rs620327	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs663205	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs681582	1.00[CHB][hapmap]
rs6870210	0.91[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap]
rs6898776	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap]
rs7704574	1.00[CHB][hapmap]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
2	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
5	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:145177200-145209200	Weak transcription	NH-A	brain
10	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
12	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
13	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
14	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
15	chr5:145187000-145209200	Weak transcription	A549	lung
16	chr5:145191600-145206400	Weak transcription	Liver	Liver
17	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
20	chr5:145196200-145211800	Weak transcription	Gastric	stomach
21	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
22	chr5:145197800-145206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:145197800-145206600	Weak transcription	HMEC	breast
24	chr5:145197800-145206800	Weak transcription	HepG2	liver
25	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:145198000-145206400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:145198000-145206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:145198200-145206400	Weak transcription	K562	blood
30	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:145198600-145206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:145198800-145209000	Weak transcription	Ovary	ovary
33	chr5:145198800-145212000	Weak transcription	Aorta	Aorta
34	chr5:145200800-145204400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:145201400-145205200	Weak transcription	Fetal Intestine Small	intestine
36	chr5:145201400-145205200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:145201400-145209400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr5:145201400-145214200	Weak transcription	Lung	lung
39	chr5:145201800-145206600	Weak transcription	Fetal Intestine Large	intestine
40	chr5:145201800-145210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:145202000-145209000	Weak transcription	HUVEC	blood vessel
42	chr5:145203600-145204200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:145203600-145204200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:145203600-145204200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:145203600-145204200	Enhancers	Fetal Heart	heart
46	chr5:145203600-145204200	Enhancers	Fetal Lung	lung
47	chr5:145203800-145204200	Enhancers	Fetal Brain Male	brain
48	chr5:145203800-145204800	Weak transcription	Left Ventricle	heart
49	chr5:145204000-145205400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr5:145204000-145208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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