Variant report

Variant	rs681582
Chromosome Location	chr5:145212135-145212136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145203763..145206199-chr5:145209923..145212863,2	K562	blood:
2	chr5:145204699..145206468-chr5:145210985..145212863,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11742313	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1549900	0.97[ASN][1000 genomes]
rs2029486	0.86[ASN][1000 genomes]
rs2087562	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs340044	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs340046	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs340047	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs394386	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs413654	1.00[CHB][hapmap]
rs4334931	0.84[ASN][1000 genomes]
rs4495235	0.84[ASN][1000 genomes]
rs4529254	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs453090	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs620327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs663205	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs681591	0.80[CEU][hapmap]
rs6870210	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6898776	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs72816435	0.86[ASN][1000 genomes]
rs7704574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9716744	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19333	chr5:145209035-145213523	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
4	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
5	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
6	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
7	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:145201400-145214200	Weak transcription	Lung	lung
9	chr5:145207200-145214200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:145207400-145212600	Weak transcription	Fetal Intestine Small	intestine
11	chr5:145207400-145212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:145207400-145213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:145207400-145214000	Weak transcription	NHEK	skin
14	chr5:145208400-145213600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:145208800-145213400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:145209000-145213400	Enhancers	HepG2	liver
17	chr5:145209200-145212600	Enhancers	K562	blood
18	chr5:145209400-145212800	Weak transcription	Ovary	ovary
19	chr5:145209400-145212800	Weak transcription	Pancreas	Pancrea
20	chr5:145209600-145213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:145209800-145212200	Weak transcription	Fetal Intestine Large	intestine
22	chr5:145209800-145214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:145209800-145214200	Weak transcription	Small Intestine	intestine
24	chr5:145209800-145214200	Weak transcription	Hela-S3	cervix
25	chr5:145210400-145212800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr5:145210400-145213400	Weak transcription	Fetal Heart	heart
27	chr5:145210400-145213600	Weak transcription	A549	lung
28	chr5:145210400-145214000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:145210600-145214400	Weak transcription	Primary T cells from cord blood	blood
30	chr5:145210800-145213000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:145210800-145213600	Weak transcription	NHDF-Ad	bronchial
32	chr5:145210800-145214200	Weak transcription	Liver	Liver
33	chr5:145211000-145212200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:145211000-145213200	Weak transcription	NHLF	lung
35	chr5:145211000-145213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:145211000-145213600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr5:145211000-145213800	Weak transcription	Osteobl	bone
38	chr5:145211000-145214200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:145211000-145214200	Weak transcription	Left Ventricle	heart
40	chr5:145211000-145214200	Weak transcription	Right Atrium	heart
41	chr5:145211000-145214400	Weak transcription	HSMMtube	muscle
42	chr5:145211200-145213000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:145211200-145213400	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:145211200-145213400	Weak transcription	HUVEC	blood vessel
45	chr5:145211200-145213800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:145211200-145213800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:145211200-145214000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:145211200-145214000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:145211200-145214000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:145211200-145214000	Weak transcription	NH-A	brain

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