Variant report

Variant	rs6898776
Chromosome Location	chr5:145202461-145202462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145200389..145203270-chr5:145232489..145236140,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10052931	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11742313	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951153	0.90[ASN][1000 genomes]
rs1549900	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2029486	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087562	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340044	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs340046	0.87[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs340047	0.96[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs394386	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs413654	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap]
rs4334931	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4495235	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4529254	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453090	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620327	0.88[CEU][hapmap];0.88[CHB][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs663205	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs681582	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6870210	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816435	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704574	0.88[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9716744	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
2	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
6	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:145177200-145209200	Weak transcription	NH-A	brain
11	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
13	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
14	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
15	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
16	chr5:145187000-145209200	Weak transcription	A549	lung
17	chr5:145191600-145206400	Weak transcription	Liver	Liver
18	chr5:145192000-145203600	Weak transcription	Adipose Nuclei	Adipose
19	chr5:145192400-145203600	Weak transcription	Left Ventricle	heart
20	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:145193000-145204000	Weak transcription	Spleen	Spleen
22	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
24	chr5:145195800-145203600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:145196200-145211800	Weak transcription	Gastric	stomach
26	chr5:145196800-145203600	Weak transcription	Fetal Lung	lung
27	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
28	chr5:145197800-145203600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:145197800-145206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr5:145197800-145206600	Weak transcription	HMEC	breast
31	chr5:145197800-145206800	Weak transcription	HepG2	liver
32	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:145198000-145203600	Weak transcription	Fetal Heart	heart
34	chr5:145198000-145203600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr5:145198000-145206400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr5:145198000-145206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:145198200-145206400	Weak transcription	K562	blood
39	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:145198600-145206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:145198800-145209000	Weak transcription	Ovary	ovary
42	chr5:145198800-145212000	Weak transcription	Aorta	Aorta
43	chr5:145200800-145204400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:145201000-145203600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:145201400-145205200	Weak transcription	Fetal Intestine Small	intestine
46	chr5:145201400-145205200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr5:145201400-145209400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr5:145201400-145214200	Weak transcription	Lung	lung
49	chr5:145201800-145206600	Weak transcription	Fetal Intestine Large	intestine
50	chr5:145201800-145210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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