Variant report

Variant	rs7704574
Chromosome Location	chr5:145187112-145187113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145185445..145188054-chr5:145191849..145194805,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10052931	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11742313	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549900	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029486	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2087562	0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs340044	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs340046	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs340047	0.84[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs394386	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs413654	1.00[CHB][hapmap]
rs4334931	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495235	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4529254	0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs453090	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs620327	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs663205	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6870210	0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6898776	0.88[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72816435	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9716744	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
2	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
5	chr5:145162800-145198200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:145167400-145200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:145167800-145191600	Weak transcription	Left Ventricle	heart
9	chr5:145167800-145194800	Weak transcription	Fetal Lung	lung
10	chr5:145168000-145203600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:145168200-145191200	Weak transcription	Fetal Heart	heart
12	chr5:145170200-145195400	Weak transcription	HepG2	liver
13	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:145171800-145188000	Weak transcription	Fetal Stomach	stomach
15	chr5:145172800-145191000	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:145172800-145196200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
18	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:145175200-145205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:145177200-145209200	Weak transcription	NH-A	brain
23	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:145177600-145191600	Weak transcription	HUVEC	blood vessel
25	chr5:145179200-145191000	Weak transcription	Gastric	stomach
26	chr5:145179200-145192200	Weak transcription	Lung	lung
27	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
28	chr5:145179400-145187600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr5:145179400-145189600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr5:145179400-145191000	Weak transcription	Ovary	ovary
31	chr5:145179400-145193000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
33	chr5:145180600-145191600	Weak transcription	Adipose Nuclei	Adipose
34	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
35	chr5:145183400-145197200	Weak transcription	HMEC	breast
36	chr5:145183600-145189000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:145183600-145197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
39	chr5:145183800-145187800	Weak transcription	Fetal Intestine Small	intestine
40	chr5:145183800-145195200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr5:145184400-145187400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr5:145184400-145192600	Strong transcription	Fetal Intestine Large	intestine
43	chr5:145184400-145193400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr5:145184800-145187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:145184800-145187400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr5:145185400-145194400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:145185600-145194600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:145185800-145202400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:145186200-145187400	Strong transcription	Aorta	Aorta
50	chr5:145186400-145194000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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